Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_M06
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 230 9e-61
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 223 1e-58
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 30 2.0
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.5
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 8.1
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 230 bits (563), Expect = 9e-61
Identities = 106/153 (69%), Positives = 124/153 (81%)
Frame = -2
Query: 572 PRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 393
PRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 392 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKKAAL 213
+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T + AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 212 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
E+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 64.9 bits (151), Expect = 8e-11
Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = -3
Query: 841 KKXXYXXVXRXXAHXQMKXLXQ-GQKXAHXMEIQXXGXTXEXKVKWAXEHXEKPIPFDSV 665
K Y V R H Q++ + QK AH MEIQ G T KV + + EK IP D+V
Sbjct: 152 KMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAV 211
Query: 664 FAQDEMIDCIGVTXGQ 617
F +DEMID IGVT G+
Sbjct: 212 FQKDEMIDIIGVTKGK 227
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 636 LGSPRGKGYXGVTSRWHTKKL 574
+G +GKGY GV +RW +L
Sbjct: 221 IGVTKGKGYEGVVTRWGVTRL 241
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 223 bits (545), Expect = 1e-58
Identities = 102/145 (70%), Positives = 120/145 (82%)
Frame = -2
Query: 572 PRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIK 393
PRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-S 295
Query: 392 NNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKKAAL 213
+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T + AL
Sbjct: 296 HAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLAL 355
Query: 212 EKINLKFIDTSSKFGHGRFQTPADK 138
E+I LKFIDTSSKFGHGRFQT +K
Sbjct: 356 EEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 66.1 bits (154), Expect = 3e-11
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -3
Query: 841 KKXXYXXVXRXXAHXQMKXLXQ-GQKXAHXMEIQXXGXTXEXKVKWAXEHXEKPIPFDSV 665
K Y + R AH Q++ + QK AH MEIQ G T KV + + EK IP D+V
Sbjct: 152 KMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAV 211
Query: 664 FAQDEMIDCIGVTXGQ 617
F +DEMID IGVT G+
Sbjct: 212 FQKDEMIDIIGVTKGK 227
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 636 LGSPRGKGYXGVTSRWHTKKL 574
+G +GKGY GV +RW +L
Sbjct: 221 IGVTKGKGYEGVVTRWGVTRL 241
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 646 IDCIGVTXGQRIXRCHFSLAHKEAXPVRHTRVLGK 542
+ CIG G +I R + H ++ PVR+ LGK
Sbjct: 164 LQCIGEAFGGKIIRAPSGVMHGKSSPVRYDEELGK 198
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 371 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -2
Query: 515 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 366
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 365 SEKSITPMGGFPHYGEVNN 309
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,303,244
Number of Sequences: 37544
Number of extensions: 446768
Number of successful extensions: 1031
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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