Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_M04
(798 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 223 2e-58
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 223 2e-58
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 223 2e-58
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 62 6e-10
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 43 2e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 40 0.002
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 40 0.002
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 40 0.002
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 33 0.24
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 33 0.24
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 33 0.24
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 31 0.96
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 2.2
U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical pr... 29 2.9
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 29 5.1
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 223 bits (544), Expect = 2e-58
Identities = 102/132 (77%), Positives = 113/132 (85%)
Frame = -1
Query: 591 TVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 412
TVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++
Sbjct: 227 TVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDI 286
Query: 411 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 232
RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVD
Sbjct: 287 RRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVD 346
Query: 231 RRTGKSN*SQPK 196
RRTGK PK
Sbjct: 347 RRTGKKVEDFPK 358
Score = 101 bits (241), Expect = 8e-22
Identities = 46/66 (69%), Positives = 55/66 (83%)
Frame = -2
Query: 200 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 21
PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V + GK
Sbjct: 357 PKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGK 416
Query: 20 VTKAAE 3
VTK+A+
Sbjct: 417 VTKSAQ 422
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -2
Query: 659 PARPXDKPLRLPLQDVYKIGGXVPCP 582
P RP D+PLRLPLQDVYKIGG P
Sbjct: 204 PQRPTDRPLRLPLQDVYKIGGIGTVP 229
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 223 bits (544), Expect = 2e-58
Identities = 102/132 (77%), Positives = 113/132 (85%)
Frame = -1
Query: 591 TVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 412
TVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++
Sbjct: 261 TVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDI 320
Query: 411 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 232
RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVD
Sbjct: 321 RRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVD 380
Query: 231 RRTGKSN*SQPK 196
RRTGK PK
Sbjct: 381 RRTGKKVEDFPK 392
Score = 101 bits (241), Expect = 8e-22
Identities = 46/66 (69%), Positives = 55/66 (83%)
Frame = -2
Query: 200 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 21
PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V + GK
Sbjct: 391 PKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGK 450
Query: 20 VTKAAE 3
VTK+A+
Sbjct: 451 VTKSAQ 456
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -2
Query: 659 PARPXDKPLRLPLQDVYKIGGXVPCP 582
P RP D+PLRLPLQDVYKIGG P
Sbjct: 238 PQRPTDRPLRLPLQDVYKIGGIGTVP 263
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 223 bits (544), Expect = 2e-58
Identities = 102/132 (77%), Positives = 113/132 (85%)
Frame = -1
Query: 591 TVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 412
TVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++
Sbjct: 261 TVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDI 320
Query: 411 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 232
RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVD
Sbjct: 321 RRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVD 380
Query: 231 RRTGKSN*SQPK 196
RRTGK PK
Sbjct: 381 RRTGKKVEDFPK 392
Score = 101 bits (241), Expect = 8e-22
Identities = 46/66 (69%), Positives = 55/66 (83%)
Frame = -2
Query: 200 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGK 21
PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V + GK
Sbjct: 391 PKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGSSGK 450
Query: 20 VTKAAE 3
VTK+A+
Sbjct: 451 VTKSAQ 456
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -2
Query: 659 PARPXDKPLRLPLQDVYKIGGXVPCP 582
P RP D+PLRLPLQDVYKIGG P
Sbjct: 238 PQRPTDRPLRLPLQDVYKIGGIGTVP 263
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 61.7 bits (143), Expect = 6e-10
Identities = 35/125 (28%), Positives = 64/125 (51%)
Frame = -1
Query: 591 TVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 412
TV +G++E+G ++ G +V P +V + + V GDN+ F +K + EL
Sbjct: 353 TVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENEL 412
Query: 411 RRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVD 232
+ G++ S ++ K F A+V+VL H I++GY+ VL +A + +D
Sbjct: 413 QGGFII-CSPDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATID 471
Query: 231 RRTGK 217
++TG+
Sbjct: 472 KKTGE 476
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = -2
Query: 197 KSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 48
K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 481 KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Frame = -1
Query: 591 TVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVS 424
T+ G + +G ++ I++ P + + +KS+ + G + F +K +
Sbjct: 388 TIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCGQSASFALKKIP 447
Query: 423 VKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIK 244
K++R+G V D K P F A+++VL+HP I Y +L + +
Sbjct: 448 KKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAMLHIGSVRQTATLVSMG 506
Query: 243 EKVDRRTG 220
++V RTG
Sbjct: 507 KEV-LRTG 513
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 40.3 bits (90), Expect = 0.002
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Frame = -1
Query: 591 TVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNV 427
TV G++E G+LK G I + T VKSV E + + +A PGD +G ++ +
Sbjct: 267 TVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGL 326
Query: 426 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 268
K++RRG V + + K AQ+ VL TP+ + + H+
Sbjct: 327 GPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEHV 376
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 40.3 bits (90), Expect = 0.002
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Frame = -1
Query: 591 TVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNV 427
TV G++E G+LK G I + T VKSV E + + +A PGD +G ++ +
Sbjct: 268 TVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGL 327
Query: 426 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 268
K++RRG V + + K AQ+ VL TP+ + + H+
Sbjct: 328 GPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEHV 377
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 40.3 bits (90), Expect = 0.002
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Frame = -1
Query: 591 TVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNV 427
TV G++E G+LK G I + T VKSV E + + +A PGD +G ++ +
Sbjct: 268 TVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGL 327
Query: 426 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 268
K++RRG V + + K AQ+ VL TP+ + + H+
Sbjct: 328 GPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFSEHV 377
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 200 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 48
P+ I G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 538 PRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 200 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 48
P+ I G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 556 PRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 33.1 bits (72), Expect = 0.24
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -1
Query: 591 TVPVGRVETGVLKPGTIVVFAPANIT--TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVK 418
TV VG +E GVLK G V T T +++ ++++E GD+ G + V
Sbjct: 255 TVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGD 314
Query: 417 ELRRGYVAG 391
++RG AG
Sbjct: 315 TVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 33.1 bits (72), Expect = 0.24
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -1
Query: 591 TVPVGRVETGVLKPGTIVVFAPANIT--TEVKSVEMHHEALQEAVPGDNVGFNVKNVSVK 418
TV VG +E GVLK G V T T +++ ++++E GD+ G + V
Sbjct: 255 TVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGD 314
Query: 417 ELRRGYVAG 391
++RG AG
Sbjct: 315 TVKRGMWAG 323
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 31.1 bits (67), Expect = 0.96
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = -1
Query: 579 GRVETGVLKPGTIVVFAPANITT----EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKEL 412
G + G L G V+ P T V S+ +A+ PG+ ++ L
Sbjct: 422 GMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPGEAASISLNLPDGVSL 481
Query: 411 RRGYVAGDSKNNPPKGAADFTAQVIVLNH 325
RRG V + + PP +FTA +++L H
Sbjct: 482 RRGMVLAEIDHQPPV-CYEFTANLLLLCH 509
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 555 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 430
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical
protein F28B4.2 protein.
Length = 860
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 511 SSDVGGGKDNNGTWFQHTSFNSADGHGTIPPI 606
+S+ G + NGTW QH+ S+ + IP I
Sbjct: 540 TSEDSGSHNGNGTWHQHSHSYSSSTNSQIPSI 571
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 28.7 bits (61), Expect = 5.1
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = +2
Query: 341 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVM 520
T A +AAP GGLF + T P T F T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 521 LAGAKTTMVPGFNTPVSTLPT 583
+ T+ +P P PT
Sbjct: 528 TTTSTTSTLP---KPAEATPT 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,431,213
Number of Sequences: 27780
Number of extensions: 412308
Number of successful extensions: 1124
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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