Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_M01
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   0.79 
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    31   0.83 
02_05_0686 - 30900748-30902167,30903442-30904742                       29   4.4  
07_01_0080 + 587674-588510                                             29   5.9  
12_02_1174 - 26696869-26698191                                         28   7.8  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 683 PXXXPPPXPXXXXPXXXXPPXXXPXPP 763
           P   PPP P    P    PP   P PP
Sbjct: 546 PPPPPPPPPSGNKPAFSPPPPPPPPPP 572



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 683 PXXXPPPXPXXXXPXXXXPPXXXPXPP 763
           P   PPP P    P    PP   P PP
Sbjct: 600 PSPPPPPPPPPILPNRSVPPPPPPPPP 626



 Score = 27.9 bits (59), Expect(2) = 0.79
 Identities = 16/65 (24%), Positives = 16/65 (24%)
 Frame = +1

Query: 586 PPPXPPXPXXXXXXXXXXXSXXXXXXXPPXXXXXXXPXXXPXXXXPXXXXXPPXXPXXPP 765
           PPP PP P           S       PP       P   P    P         P  PP
Sbjct: 564 PPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPP 623

Query: 766 XXXXP 780
               P
Sbjct: 624 PPPLP 628



 Score = 22.2 bits (45), Expect(2) = 0.79
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 577 PXXPPPXPPXP 609
           P  PPP PP P
Sbjct: 544 PPPPPPPPPPP 554


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 17/68 (25%), Positives = 17/68 (25%)
 Frame = +1

Query: 577 PXXPPPXPPXPXXXXXXXXXXXSXXXXXXXPPXXXXXXXPXXXPXXXXPXXXXXPPXXPX 756
           P  PPP PP P                   PP       P   P          PP  P 
Sbjct: 55  PPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPP 114

Query: 757 XPPXXXXP 780
            PP    P
Sbjct: 115 SPPPSAPP 122


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +2

Query: 683 PXXXPPPXPXXXXPXXXXPPXXXPXPPXXXXXXP 784
           P   PPP P    P    PP   P PP      P
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPP 346


>07_01_0080 + 587674-588510
          Length = 278

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 683 PXXXPPPXPXXXXPXXXXPPXXXPXPP 763
           P   PPP P    P    PP   P PP
Sbjct: 91  PPPPPPPPPSSGSPPPPPPPPPPPPPP 117


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/82 (23%), Positives = 19/82 (23%)
 Frame = +1

Query: 535 PXXXXXPXXXXXXXPXXPPPXPPXPXXXXXXXXXXXSXXXXXXXPPXXXXXXXPXXXPXX 714
           P     P       P  PPP PP P                   PP       P   P  
Sbjct: 143 PVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPP-SPPPPPPTRPPSV 201

Query: 715 XXPXXXXXPPXXPXXPPXXXXP 780
             P     P   P  PP    P
Sbjct: 202 KPPVVQPKPQPPPTLPPPSPPP 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,128,635
Number of Sequences: 37544
Number of extensions: 136163
Number of successful extensions: 1086
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)