Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_L18
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0355 + 28657833-28660665,28660762-28661126                       31   1.2  
01_01_0275 - 2265650-2265904,2266044-2266204,2266381-2266588,226...    30   2.0  
04_04_0632 + 26738969-26739350,26739535-26739543,26739674-267405...    30   2.7  
12_02_0653 + 21545862-21546584,21546661-21546696,21547182-215474...    29   6.2  
06_03_1474 - 30388896-30389120,30389537-30389599,30389702-30389785     28   8.1  

>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 430 GSRSCPLMLSQSLGRGHTTGWQVQVGPSGCQKCKNLKRLFFF*DGIS---PLWL 278
           GS + P++ + +L   H TG    + P G   CKNL+    F +G +   P WL
Sbjct: 266 GSFNLPMLQTVNLNTNHLTG----IVPQGFGACKNLQEFILFSNGFTGGIPPWL 315


>01_01_0275 -
           2265650-2265904,2266044-2266204,2266381-2266588,
           2266959-2267112,2267557-2267650,2267814-2267919,
           2268001-2268075,2268336-2268443,2268672-2268725,
           2268818-2268910,2269111-2269206,2269682-2269723
          Length = 481

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -1

Query: 654 MGSPCQLPGQSLXSRXGIAIEKA*FT--QSRLFGRPEFYSSNQSPQNSGIPVFKNNLVGR 481
           +GSP  LPG        + I KA     + ++FG   F+ ++Q P   GI +FK NL G+
Sbjct: 87  VGSP--LPGMKQQLDESVRIPKATIDILKDQVFGFDTFFVTSQEPYEGGI-LFKGNLRGQ 143


>04_04_0632 +
           26738969-26739350,26739535-26739543,26739674-26740545,
           26743048-26743098,26743966-26744127,26744278-26744519,
           26744772-26744859,26744964-26745158
          Length = 666

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 470 VRSADWSARDEITRESKLSAYAESVPG*RPHNWLAGPGGAIRLSEMQKPEKT--FFFL 303
           V   D SA D +  E+  +AY+    G      L GP G + L++ Q  E+T  FF+L
Sbjct: 498 VFEVDTSAADGVVTEAGAAAYSCGTGGGAVGRGLMGPFGLLVLADDQLSERTAVFFYL 555


>12_02_0653 +
           21545862-21546584,21546661-21546696,21547182-21547401,
           21547590-21548025,21548103-21548273,21548354-21548636,
           21548716-21548829,21549012-21549082,21549417-21549429
          Length = 688

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/54 (27%), Positives = 19/54 (35%)
 Frame = -2

Query: 482 GGQ*VRSADWSARDEITRESKLSAYAESVPG*RPHNWLAGPGGAIRLSEMQKPE 321
           GG   + A+W   DE   ES        +P  R  NW      + R      PE
Sbjct: 180 GGYAGKQAEWDKEDEAAAESNTPQVLADIPVQRARNWARVKKNSDRTLSFPNPE 233


>06_03_1474 - 30388896-30389120,30389537-30389599,30389702-30389785
          Length = 123

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 386 RPHNWLAGPGGAIRLSEMQKPEKTFFFLRRNLALVAQAWNPSTLKGQSR 240
           RP   +AG GG +RLS +  P ++  +  + L++V  A  P+ + G+ R
Sbjct: 22  RPSPGIAGGGGNVRLSVVSSPRRS--WPGKVLSVVLAAAGPAGIVGRRR 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,355,551
Number of Sequences: 37544
Number of extensions: 502401
Number of successful extensions: 1285
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)