Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_L17
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   207   1e-54
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   207   1e-54
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.82 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.4  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    26   5.8  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  207 bits (506), Expect = 1e-54
 Identities = 101/161 (62%), Positives = 120/161 (74%)
 Frame = -2

Query: 591 GTQRSYPVRHXKGXRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 412
           GT+R  P +  +G RKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 411 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 232
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 231 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = -3

Query: 734 GTXEDKXKWAREHXEXPIPVDSVFAQDEMIDCIGVTQGQ 618
           G+  DK +WAREH E  + + S F Q+EMID IGVT+G+
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 25/86 (29%), Positives = 38/86 (44%)
 Frame = -1

Query: 811 VIAHXXMXLLXXGQKXAPIMXIQXXGVPXRTX*NGPENXWRXLSLSILCLPKMK*LTALV 632
           V+AH  +      QK A +M IQ  G             +           + + +  + 
Sbjct: 160 VLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIG 219

Query: 631 SPKGKGYKGVTSRWHTKKLPRKTXQG 554
             +GKG +G T+RW TK+LPRKT +G
Sbjct: 220 VTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  207 bits (506), Expect = 1e-54
 Identities = 101/161 (62%), Positives = 120/161 (74%)
 Frame = -2

Query: 591 GTQRSYPVRHXKGXRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 412
           GT+R  P +  +G RKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 411 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 232
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 231 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = -3

Query: 734 GTXEDKXKWAREHXEXPIPVDSVFAQDEMIDCIGVTQGQ 618
           G+  DK +WAREH E  + + S F Q+EMID IGVT+G+
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 25/86 (29%), Positives = 38/86 (44%)
 Frame = -1

Query: 811 VIAHXXMXLLXXGQKXAPIMXIQXXGVPXRTX*NGPENXWRXLSLSILCLPKMK*LTALV 632
           V+AH  +      QK A +M IQ  G             +           + + +  + 
Sbjct: 160 VLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIG 219

Query: 631 SPKGKGYKGVTSRWHTKKLPRKTXQG 554
             +GKG +G T+RW TK+LPRKT +G
Sbjct: 220 VTRGKGNEGTTARWGTKRLPRKTHRG 245


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 400 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 498
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 367 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 489
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 130 HGYTQEGSYSRRSCGYHNPS 71
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -1

Query: 706 PENXWRXLSLSILCLPKMK*LTALVSPKGKGYKGVTSRWHTKKLPRKT 563
           PE  W+ +SLS L LPK   +          Y    SR H  KLP++T
Sbjct: 631 PECRWQKVSLSELVLPKKVKI---------AYMKAVSRVHPDKLPQQT 669


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 352 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 480
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,611
Number of Sequences: 5004
Number of extensions: 67482
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)