Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_L14
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.80 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.80 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -2

Query: 751 WPNDMQTXTFKFGXRMHNSDXMDFVIDQK 665
           WP D       FG  +H+ + ++  +D+K
Sbjct: 176 WPYDTHRCRINFGSWVHSGEEVNIFLDKK 204


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 748 PNDMQTXTFKFGXRMHNSDXMDFVIDQKNIQYVR 647
           P D++   FK+G   H +    + +D KN++Y R
Sbjct: 655 PQDIENI-FKYGYVSHANQRNMYKLDLKNMKYTR 687


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 313 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 215
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 620 CPVRCRARTVARWKLAWQCS 561
           C VRC A +  RW   W+ S
Sbjct: 19  CSVRCSAASGLRWFEIWRDS 38


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -2

Query: 766 MQLNXWPNDMQTXTFKFGXRMHNSDXMDFVI-DQKN 662
           + +  +P D QT   KFG    N D +   + + KN
Sbjct: 153 IDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKN 188


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 329 WRAAAACTRDTRGALPASPSRLDT 400
           W    ACT  T G +  +PS  DT
Sbjct: 487 WVFTLACTAGTLGIIFQAPSLYDT 510


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 469 LAARHWTTTSCGFSVH 422
           LAAR  T++SC +  H
Sbjct: 331 LAAREITSSSCSYMAH 346


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 657 CIFFWSITKSIXSLLCILXPNLNV 728
           C+FF +   S   +LC   P+ N+
Sbjct: 434 CVFFLTTIVSTTVILCGSPPSANI 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,366
Number of Sequences: 438
Number of extensions: 2484
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)