Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_L11
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117205-6|CAB55166.2|  167|Caenorhabditis elegans Hypothetical ...    29   3.0  
AL117205-2|CAB55164.1|  169|Caenorhabditis elegans Hypothetical ...    29   3.0  
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    28   9.3  

>AL117205-6|CAB55166.2|  167|Caenorhabditis elegans Hypothetical
           protein Y116A8A.7 protein.
          Length = 167

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 641 PCQVXMLGAHXHFEIRSTPFXYTTDDSRRRRVSGSATTTP 522
           PC +     +  F I   PF YTT++++  R++     TP
Sbjct: 99  PCGILKKTQNMFFNITFAPFNYTTENTKNDRITVKWINTP 138


>AL117205-2|CAB55164.1|  169|Caenorhabditis elegans Hypothetical
           protein Y116A8A.2 protein.
          Length = 169

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 641 PCQVXMLGAHXHFEIRSTPFXYTTDDSRRRRVSGSATTTP 522
           PC +     +  F I   PF YTT++++  R++     TP
Sbjct: 101 PCGILKKTQNMFFNITFAPFNYTTENTKNDRITVKWINTP 140


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 439 DSEHDQYVEFTNSDLEADAAQSTVPFID 356
           D  HD+   FTN  L       T PF+D
Sbjct: 40  DKGHDELKAFTNEQLNVFLTDHTAPFVD 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,936,300
Number of Sequences: 27780
Number of extensions: 189630
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)