Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_L09
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z78542-1|CAB01743.1|  166|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -1

Query: 703 GARKVTHQG*LACGSQAFIATL--LFDPSMSALPIIAKQNSPSVDCSPIKRERELGL-DR 533
           G R VT QG  A  S+        +FD S     + AKQN+  V+ S +K +R+ G+ DR
Sbjct: 157 GLRPVTQQGLRAPPSRMGTGNSRQVFDKSYYIGVLRAKQNAIKVEISRMKEKRDKGIKDR 216

Query: 532 RE 527
            E
Sbjct: 217 NE 218


>Z78542-1|CAB01743.1|  166|Caenorhabditis elegans Hypothetical
           protein F20D1.1 protein.
          Length = 166

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 663 PQASYPWWVTFLA 701
           P A++PWWV FLA
Sbjct: 18  PNAAFPWWVRFLA 30


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 453 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 274
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 273 SH--SKRETRRRSP 238
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,317,845
Number of Sequences: 27780
Number of extensions: 362328
Number of successful extensions: 1071
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)