Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_L06
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    48   2e-06
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   5.9  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    26   7.8  

>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 34/58 (58%)
 Frame = -2

Query: 736 QXVMXCXVXXLXSTXVQRKLPYLQVPLHAVIKLTPVAYGCREEHIRLSVDAVDTHRPK 563
           Q ++ C      +  ++ +LP++ VPLH +IKLTP+ Y   EE + + + AV T R K
Sbjct: 351 QAILRCIYGYYHNLSLE-ELPFINVPLHTIIKLTPMTYETIEERVTVPISAVSTQRGK 407


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 579 STASTLSRMCSSRQPYATGVSLITACSGTC 668
           S ++T+SR  S ++ Y+T  S    CS +C
Sbjct: 121 SASATVSRKSSLQEKYSTRFSYKAGCSDSC 150


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 223 PSKSSASQNLPPDWKRD-PLRRCGEKLSGLSLWVNLLAEPFVASDWFDDRCLRYLKALLM 399
           P+ SS S  L  D  R      C EK    +LW+N  AE   A+      C+  L+   +
Sbjct: 32  PTNSSISVTLSQDDLRTVTTASCSEKFENDTLWLNGNAEEIFANKRL-RVCVEELRKARL 90

Query: 400 DRED 411
           D E+
Sbjct: 91  DLEE 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,363
Number of Sequences: 5004
Number of extensions: 48057
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)