Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_L06
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0068 - 572964-573323                                             32   0.50 
08_01_1010 - 10215625-10216335,10216372-10216473                       30   2.0  
03_02_0658 + 10228794-10228943,10229042-10229105,10229510-102298...    29   6.2  
03_06_0618 - 35132077-35132830,35133690-35135212                       28   8.2  

>06_01_0068 - 572964-573323
          Length = 119

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +2

Query: 614 AAAVRDRRQLDHRVQRHLQVRXLPLHXCRXKXXHXTXHDGLXARXRAR 757
           A  +R+RRQ   R +   Q+R  PLH  R      T HDG   R R R
Sbjct: 6   AGRLRERRQR-RRQREERQLRDEPLHLRRVLRQRGTHHDGKHRRSRGR 52


>08_01_1010 - 10215625-10216335,10216372-10216473
          Length = 270

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 611 GAHPAQRGRRRHAPPQAAGTRPLCTPRVL 525
           G  P  R RRRH P Q  G+   C+PR +
Sbjct: 224 GTSPLWRRRRRHHPYQRRGSSIACSPRAV 252


>03_02_0658 +
           10228794-10228943,10229042-10229105,10229510-10229805,
           10230689-10230904,10231409-10231549,10232407-10232499,
           10234010-10234108,10234198-10234227,10234274-10234360,
           10234636-10234689,10234758-10234835,10235128-10235202,
           10236265-10236356,10236433-10236490,10236590-10236664,
           10236966-10237013,10239003-10239065,10239167-10239258,
           10239693-10239761,10239867-10239930,10240007-10240072,
           10240170-10240271
          Length = 703

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = -2

Query: 682 KLPYLQVPLHAVIKLTPVAYGCREEHIRLSVDAVDT 575
           +LP +++PLH +I++     G +E+  +L +DAV++
Sbjct: 665 ELPNIEIPLHTIIEIQMGVAGVQEKRYKL-MDAVNS 699


>03_06_0618 - 35132077-35132830,35133690-35135212
          Length = 758

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +2

Query: 11  FFWDTIIKYVLQATHIEVRAAVYTVLIYVKRSNHQKAFFLSMLIALRDYISVTLACR 181
           F W ++I   +Q  H E    ++  L+Y ++   Q  F +S +++    +SV   C+
Sbjct: 352 FIWTSMITAFVQNEHFEKALYLFRELLYTRKGTDQ--FTISSVMSACAALSVPTTCK 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,237,146
Number of Sequences: 37544
Number of extensions: 349080
Number of successful extensions: 949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)