Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_L06
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical...    60   1e-09
AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical...    40   0.003
U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical pr...    39   0.004
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase...    28   9.7  
U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase ...    28   9.7  

>AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6a protein.
          Length = 450

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 36/92 (39%), Positives = 48/92 (52%)
 Frame = -2

Query: 832 PGGXAXGXLVAXVEPRHHGXWXXRATCSXSRXQXVMXCXVXXLXSTXVQRKLPYLQVPLH 653
           P G +   LVA +EP              S  Q V+ C +    +   +  LPYL+VPLH
Sbjct: 361 PSGESYEDLVARLEPVIMELERQSNVLVISH-QAVLRCILAYFTNKN-RDDLPYLKVPLH 418

Query: 652 AVIKLTPVAYGCREEHIRLSVDAVDTHRPKPQ 557
            VIKLTP AY C  E  +  ++AV+T+R KPQ
Sbjct: 419 TVIKLTPKAYSCEIELFKFDIEAVNTYREKPQ 450


>AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6b protein.
          Length = 435

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 27/70 (38%), Positives = 34/70 (48%)
 Frame = -2

Query: 832 PGGXAXGXLVAXVEPRHHGXWXXRATCSXSRXQXVMXCXVXXLXSTXVQRKLPYLQVPLH 653
           P G +   LVA +EP              S  Q V+ C +    +   +  LPYL+VPLH
Sbjct: 367 PSGESYEDLVARLEPVIMELERQSNVLVISH-QAVLRCILAYFTNKN-RDDLPYLKVPLH 424

Query: 652 AVIKLTPVAY 623
            VIKLTP AY
Sbjct: 425 TVIKLTPKAY 434


>U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical
           protein K02B2.1 protein.
          Length = 457

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -2

Query: 736 QXVMXCXVXXLXSTXVQRKLPYLQVPLHAVIKLTPVAYGC 617
           Q V+ C +       +  +LPY+ +PLH+++KLTP AY C
Sbjct: 390 QAVLRCVLAYFYDRPLS-ELPYIDIPLHSLVKLTPRAYHC 428


>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
           (b) subunit protein2 protein.
          Length = 1193

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 584 GVHAEPDVLLAAAVRDRRQLDHRVQRHLQVRXL 682
           G+H EPD L+    + RRQ+D  V     VR +
Sbjct: 581 GIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDI 613


>U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase II,
           second largestsubunit protein.
          Length = 859

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 584 GVHAEPDVLLAAAVRDRRQLDHRVQRHLQVRXL 682
           G+H EPD L+    + RRQ+D  V     VR +
Sbjct: 382 GIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDI 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,334,771
Number of Sequences: 27780
Number of extensions: 286881
Number of successful extensions: 762
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)