Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_L05
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    24   5.1  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    24   5.2  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   6.0  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    29   6.0  
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 23.8 bits (49), Expect(2) = 5.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 778 SXXPPPKPPXPP 813
           S  PPP PP PP
Sbjct: 627 SAAPPPPPPPPP 638



 Score = 23.4 bits (48), Expect(2) = 5.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 787 PPPKPPXPPXTXXXP 831
           PPP PP PP     P
Sbjct: 649 PPPPPPPPPSGAGGP 663


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 23.8 bits (49), Expect(2) = 5.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 778 SXXPPPKPPXPP 813
           S  PPP PP PP
Sbjct: 453 SAAPPPPPPPPP 464



 Score = 23.4 bits (48), Expect(2) = 5.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 787 PPPKPPXPPXTXXXP 831
           PPP PP PP     P
Sbjct: 475 PPPPPPPPPSGAGGP 489


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 787 PPPKPPXPPXTXXXPKPXXXXXXXPLQXPP 876
           PPP PP P  T   P P       P   PP
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 303


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 787 PPPKPPXPPXTXXXPKPXXXXXXXPLQXPP 876
           PPP PP P  T   P P       P   PP
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 313


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 787 PPPKPPXPPXTXXXPKP 837
           PPP PP PP T   P P
Sbjct: 84  PPPPPPPPPPTLKAPPP 100


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 778 SXXPPPKPPXPPXTXXXPKP 837
           S  PPP PP PP     P+P
Sbjct: 751 SSTPPPPPPPPPLAAAPPQP 770


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,276,356
Number of Sequences: 27780
Number of extensions: 164016
Number of successful extensions: 981
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)