Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_L04
         (841 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for MG...    53   1e-06
BC006350-1|AAH06350.1|  619|Homo sapiens BUD13 homolog (S. cerev...    31   5.2  
X74301-1|CAA52354.1| 1130|Homo sapiens (MHC) class II transactiv...    31   6.9  
U18288-1|AAA88862.1|  884|Homo sapiens MHC class II transactivat...    31   6.9  
U18259-1|AAA88861.1| 1130|Homo sapiens MHC class II transactivat...    31   6.9  
EF064747-1|ABK41930.1| 1130|Homo sapiens class II, major histoco...    31   6.9  
AY699071-1|AAU06586.1| 1107|Homo sapiens CIITA IV protein.             31   6.9  
AF410154-1|AAL04118.1|  932|Homo sapiens MHC2TA protein.               31   6.9  
BC048251-1|AAH48251.1|  322|Homo sapiens ZDHHC12 protein protein.      30   9.1  
AL441992-6|CAI15406.1|  210|Homo sapiens zinc finger, DHHC-type ...    30   9.1  

>BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for
           MGC:134704) protein.
          Length = 44

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = +1

Query: 583 MIGRADIEGSKSNVAMNAWAAXSQLSPGGNFSGTSC 690
           MIGRADIEGSKS+VAMNAW   +   P GNFS TSC
Sbjct: 1   MIGRADIEGSKSDVAMNAWPPQASY-PCGNFSDTSC 35


>BC006350-1|AAH06350.1|  619|Homo sapiens BUD13 homolog (S.
           cerevisiae) protein.
          Length = 619

 Score = 31.1 bits (67), Expect = 5.2
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 32  AGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSR 166
           +G S  R +HD+  PS  PR+ R  S+D S PR      PD   R
Sbjct: 211 SGASPRRVRHDSPDPSP-PRRARHGSSDISSPRRVHNNSPDTSRR 254


>X74301-1|CAA52354.1| 1130|Homo sapiens (MHC) class II
           transactivator protein.
          Length = 1130

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 680 PEKLPPGDNWLXAAQAFIATLLFDPSMSAL 591
           P K  P DNWL     F+A L+F P    L
Sbjct: 741 PRKKRPYDNWLEGVPRFLAGLIFQPPARCL 770


>U18288-1|AAA88862.1|  884|Homo sapiens MHC class II transactivator
           CIITA protein.
          Length = 884

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 680 PEKLPPGDNWLXAAQAFIATLLFDPSMSAL 591
           P K  P DNWL     F+A L+F P    L
Sbjct: 693 PRKKRPYDNWLEGVPRFLAGLIFQPPARCL 722


>U18259-1|AAA88861.1| 1130|Homo sapiens MHC class II transactivator
           CIITA protein.
          Length = 1130

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 680 PEKLPPGDNWLXAAQAFIATLLFDPSMSAL 591
           P K  P DNWL     F+A L+F P    L
Sbjct: 741 PRKKRPYDNWLEGVPRFLAGLIFQPPARCL 770


>EF064747-1|ABK41930.1| 1130|Homo sapiens class II, major
           histocompatibility complex, transactivator protein.
          Length = 1130

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 680 PEKLPPGDNWLXAAQAFIATLLFDPSMSAL 591
           P K  P DNWL     F+A L+F P    L
Sbjct: 741 PRKKRPYDNWLEGVPRFLAGLIFQPPARCL 770


>AY699071-1|AAU06586.1| 1107|Homo sapiens CIITA IV protein.
          Length = 1107

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 680 PEKLPPGDNWLXAAQAFIATLLFDPSMSAL 591
           P K  P DNWL     F+A L+F P    L
Sbjct: 718 PRKKRPYDNWLEGVPRFLAGLIFQPPARCL 747


>AF410154-1|AAL04118.1|  932|Homo sapiens MHC2TA protein.
          Length = 932

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 680 PEKLPPGDNWLXAAQAFIATLLFDPSMSAL 591
           P K  P DNWL     F+A L+F P    L
Sbjct: 741 PRKKRPYDNWLEGVPRFLAGLIFQPPARCL 770


>BC048251-1|AAH48251.1|  322|Homo sapiens ZDHHC12 protein protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 359 TPLRPKPA*PNPARICSLWSPESRE 285
           TP  P P  P PA +CS  SPE R+
Sbjct: 68  TPTPPTPVLPGPASLCSPASPELRQ 92


>AL441992-6|CAI15406.1|  210|Homo sapiens zinc finger, DHHC-type
           containing 12 protein.
          Length = 210

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 359 TPLRPKPA*PNPARICSLWSPESRE 285
           TP  P P  P PA +CS  SPE R+
Sbjct: 68  TPTPPTPVLPGPASLCSPASPELRQ 92


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,614,139
Number of Sequences: 237096
Number of extensions: 2603156
Number of successful extensions: 6046
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6038
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)