Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_L02
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    29   0.99 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.7  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   4.0  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.3  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   7.0  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   9.3  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.3  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   9.3  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 321 CENGRCSLDGACECDSGYILSNGTCIRNNTACSANCS 211
           C+NG C+ DG C    G     G    NN   S N S
Sbjct: 65  CKNGTCAGDGFCNGTGGSASCTGCPALNNRIRSLNAS 101


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 2/116 (1%)
 Frame = -2

Query: 579  NYAMSNGTCAPVCRRACTNGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHCSSP 400
            +Y   NG C    +  C NGA       +       +P       P  +     +   S 
Sbjct: 817  SYQNCNGACYNPSQYGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTTTAQST 876

Query: 399  NTCTCFKDYERNDTNSNVC--YKKCDGACENGRCSLDGACECDSGYILSNGTCIRN 238
                C  +Y   D +S  C   + C         S +GAC   S Y+ S+G+   N
Sbjct: 877  GMQLCGSNY--YDASSYYCDNDQLCPIIDGVDYLSCNGACYNPSQYVCSDGSLSPN 930



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 525  NGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHCSSPNTCTCFKDYERNDTNSNV 346
            NGAC  P +  C DG  LSP        V + +   +   +P T T       + T++NV
Sbjct: 911  NGACYNPSQYVCSDG-SLSPN------TVTTTKATTTFTPTPTTTTTPTPTTTSATSTNV 963


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 438 CSERCVNSHCSSPNTCTCFKDYERNDTNSNVCYK 337
           C E C N+ C    TC   K    +D     CY+
Sbjct: 331 CGEDCENNPCCDGKTCKLTKGSLCDDQQDACCYQ 364


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 684 TCDSGYKNIDDVCVPQCLDCRNGEC 610
           TC+S  K+   +C+ QC  C +  C
Sbjct: 75  TCESCKKHTCAICIRQCHKCESNVC 99


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 408 NSESSRSAQNRPAGRRKDPRDSTGSHRRTCTYRAPSTPH 524
           NS S  ++QN    ++    +S G+  ++  Y A STPH
Sbjct: 579 NSNSELASQNPLYAQQAVSMESMGNAIQSSAYSAMSTPH 617


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/69 (23%), Positives = 26/69 (37%)
 Frame = +3

Query: 405 MNSESSRSAQNRPAGRRKDPRDSTGSHRRTCTYRAPSTPHLCRPDGTQGRTCRYSWRNCR 584
           + S +S      P G+RK  RD  G  +   T  +    ++   +  +   C    R   
Sbjct: 650 LRSVASSPLNKEPIGKRKSKRDIFGRQKVLPTGISEGLSNIPAKEAIKTADCHGWMRKRS 709

Query: 585 DRGNHWEPR 611
           DR   W+ R
Sbjct: 710 DRYGVWKSR 718


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 432 ERCVNSHCSSPNTCTCFKDYERNDTNSNVCYK 337
           ER +   CS P    C ++Y R +     CYK
Sbjct: 283 ERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYK 314


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 588 CHDNYAMSNGTCAPVCRRACTN 523
           C D Y + N    P+C+++ TN
Sbjct: 525 CIDPYLLKNSDLCPLCKQSVTN 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,883
Number of Sequences: 5004
Number of extensions: 58843
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)