Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_L01
(777 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical pr... 29 2.8
U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 28 6.5
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 6.5
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 6.5
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 6.5
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p... 28 8.6
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p... 28 8.6
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr... 28 8.6
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 28 8.6
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 28 8.6
>U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical
protein C01F4.2b protein.
Length = 622
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -1
Query: 354 KQSTSPKTRHLGSSRSTNGAFRYFKHRSPFSSNPSLATKGSTS--KLTLRHSPLSFS 190
+ STS + S +R FKHR+ F S S K +LTLRH + S
Sbjct: 110 QMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166
>U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical
protein C01F4.2a protein.
Length = 986
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -1
Query: 354 KQSTSPKTRHLGSSRSTNGAFRYFKHRSPFSSNPSLATKGSTS--KLTLRHSPLSFS 190
+ STS + S +R FKHR+ F S S K +LTLRH + S
Sbjct: 110 QMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 516 PRGSDGYPAKTGLNDLKG 569
PRG DG+P + GL+ L G
Sbjct: 1153 PRGDDGFPGRDGLDGLPG 1170
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 516 PRGSDGYPAKTGLNDLKG 569
PRG DG+P + GL+ L G
Sbjct: 1410 PRGDDGFPGRDGLDGLPG 1427
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 516 PRGSDGYPAKTGLNDLKG 569
PRG DG+P + GL+ L G
Sbjct: 1409 PRGDDGFPGRDGLDGLPG 1426
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 494 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 378
H D + E+ ++ + S RH + E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 494 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 378
H D + E+ ++ + S RH + E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
protein 104, isoforma protein.
Length = 1584
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 369 CGQNGKQSTSPKTRHLGSSRSTNGAFRYFKHRSPFSSNPS 250
C NGKQ T+P H G SR G F++ P + S
Sbjct: 533 CYINGKQVTTPTVLHTG-SRVILGEHHVFRYNDPQEARQS 571
>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
protein 104, isoformb protein.
Length = 1628
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 369 CGQNGKQSTSPKTRHLGSSRSTNGAFRYFKHRSPFSSNPS 250
C NGKQ T+P H G SR G F++ P + S
Sbjct: 533 CYINGKQVTTPTVLHTG-SRVILGEHHVFRYNDPQEARQS 571
>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
ZK1193.2 protein.
Length = 1250
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 312 GRIRDDVFWATSTAFHSVRRIGNVVTGGHDERVLVSCRFIEVAH 443
G I D++++AT A V IGN ++ GHD ++ + ++H
Sbjct: 1065 GSISDEMYYATVGA---VNTIGNAISIGHDHSRILLGTYDAISH 1105
>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
protein protein.
Length = 1584
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 369 CGQNGKQSTSPKTRHLGSSRSTNGAFRYFKHRSPFSSNPS 250
C NGKQ T+P H G SR G F++ P + S
Sbjct: 533 CYINGKQVTTPTVLHTG-SRVILGEHHVFRYNDPQEARQS 571
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 371 PADRMESSRRRPKHVISDPPDP 306
P ++RRR +HV+S PP P
Sbjct: 4 PVVEFTTARRRKRHVVSTPPPP 25
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,301
Number of Sequences: 27780
Number of extensions: 300376
Number of successful extensions: 825
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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