Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_K24
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...   157   2e-39
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...   148   8e-37
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    28   1.7  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      28   1.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.2  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   6.9  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  157 bits (381), Expect = 2e-39
 Identities = 78/133 (58%), Positives = 93/133 (69%)
 Frame = -2

Query: 498 AQRKVVKGEHGKRVRKIRNXVHFRRPKTFEPPRHPKYPRKXLPKRNRMDAYNIIKFPXTX 319
           AQ+ V KG H K  RK+R    FRRPKT E  R PKY RK +P  +R+D Y II  P   
Sbjct: 9   AQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINS 68

Query: 318 EAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVGKVNTLIRPDGKKKAYVRLARD 139
           E+AMKKIED+NTLVF VH  ANK  IK AVKKLY ++  K+NTLIRP+G KKA+V+L+ D
Sbjct: 69  ESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSAD 128

Query: 138 YDALDVAXXIGII 100
            DALDVA  IG +
Sbjct: 129 ADALDVANRIGFL 141


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score =  148 bits (359), Expect = 8e-37
 Identities = 74/133 (55%), Positives = 90/133 (67%)
 Frame = -2

Query: 498 AQRKVVKGEHGKRVRKIRNXVHFRRPKTFEPPRHPKYPRKXLPKRNRMDAYNIIKFPXTX 319
           AQ+ V KG H K  +K+R    FRRPKT +  R PKY RK +    R+D Y II  P   
Sbjct: 9   AQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINS 68

Query: 318 EAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVGKVNTLIRPDGKKKAYVRLARD 139
           E+AMKKIED+NTLVF VH  ANK  IK AV+KLY +   K+NTLIRP+G KKA+V+L+ D
Sbjct: 69  ESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSAD 128

Query: 138 YDALDVAXXIGII 100
            DALDVA  IG +
Sbjct: 129 ADALDVANRIGFL 141


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 85  IWNSLYDANXVGNVQCVIISSESYVRFLLTIRPDECVDF 201
           +W +++ A  V +   + +S    +RFL  ++P +C DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +1

Query: 361 ISLRQXLPWVFRVPRRFKRLGSAEMHXVANFPYSLPMFTFYNLPLSLKCFXNRFHYFFLS 540
           +S R   P  F    RF+ L S++   + + PY+ P   F     S +    + H    S
Sbjct: 201 VSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMHRRTKS 260

Query: 541 LNPSL 555
             PSL
Sbjct: 261 ATPSL 265


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 127 QCVIISSESYVRFLLTIRPDECVDFTNIY 213
           +C+ I  E +  FL  I+P E V F  ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 297 EDNNTLVFIVHTSANKHHIKAAVKKLYDINVGKVNTLI 184
           ED N LV I   SA + ++    + +   N+G V+  +
Sbjct: 372 EDTNALVRIATGSAGEMYVNVETRSIQSENIGNVSLYV 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,522
Number of Sequences: 5004
Number of extensions: 37769
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)