Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_K24
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...   172   3e-43
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855    170   1e-42
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    29   4.1  
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805...    29   5.4  
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236...    28   7.2  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score =  172 bits (418), Expect = 3e-43
 Identities = 85/133 (63%), Positives = 96/133 (72%)
 Frame = -2

Query: 498 AQRKVVKGEHGKRVRKIRNXVHFRRPKTFEPPRHPKYPRKXLPKRNRMDAYNIIKFPXTX 319
           A + V  G   K  +KIR  V F RPKT +  R PKYPR   P RN++D Y I+K+P T 
Sbjct: 30  AAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTT 89

Query: 318 EAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVGKVNTLIRPDGKKKAYVRLARD 139
           E+AMKKIEDNNTLVFIV   A+K  IKAAVKK+YDI   KVNTLIRPDGKKKAYV+L  D
Sbjct: 90  ESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPD 149

Query: 138 YDALDVAXXIGII 100
           YDALDVA  IGII
Sbjct: 150 YDALDVANKIGII 162


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score =  170 bits (413), Expect = 1e-42
 Identities = 85/131 (64%), Positives = 97/131 (74%), Gaps = 1/131 (0%)
 Frame = -2

Query: 489 KVVK-GEHGKRVRKIRNXVHFRRPKTFEPPRHPKYPRKXLPKRNRMDAYNIIKFPXTXEA 313
           K VK G   ++ +KIR  V F RPKT +  R PKYPR   P RN++D Y I+K+P T E+
Sbjct: 22  KAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTES 81

Query: 312 AMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVGKVNTLIRPDGKKKAYVRLARDYD 133
           AMKKIEDNNTLVFIV   A+K  IKAAVKK+YDI   KVNTLIRPDGKKKAYV+L  DYD
Sbjct: 82  AMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYD 141

Query: 132 ALDVAXXIGII 100
           ALDVA  IGII
Sbjct: 142 ALDVANKIGII 152


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 483 VKGEHGKRVRKIR-NXVHFRRPKTFEPPRHPKYPRKXLPKRNRMDAYN 343
           +KGE  K++R+   N    +R KT +PP H K  +K   K    D+Y+
Sbjct: 140 LKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSYS 185


>08_02_0094 +
           12277756-12278574,12280314-12280418,12280487-12280543,
           12280969-12281041,12281525-12281703,12281788-12281961,
           12282041-12282326,12282433-12282509,12282599-12282668,
           12282751-12282822,12282920-12283155,12283240-12283374,
           12283466-12283761,12284237-12284408,12284510-12284608,
           12284704-12284835,12284950-12285050,12285426-12285615,
           12285723-12285761
          Length = 1103

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 282 LVFIVHTSANKHHIKAAVKKLYDINVGKVNTLIRP 178
           L+  +H     H IK  +KK YD +  K   +I+P
Sbjct: 300 LILRMHRKEVVHEIKRHLKKSYDFHTSKCTLIIKP 334


>04_03_0995 +
           21521877-21521977,21522152-21522217,21523630-21523696,
           21523959-21524041,21524318-21524359,21524614-21524733,
           21524806-21524869,21525028-21525113,21525217-21525299,
           21525994-21526070,21526549-21526567,21526568-21526661,
           21527042-21527087
          Length = 315

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 430 EMHXVANFPY-SLPM-FTFYNLPLSLKCFXNRFHYFFLSLNPSLFGLRCNLQFGNCWLGF 603
           E+  +   PY   PM F   +L  +  CF  ++++F +SLN  L     N  F   + GF
Sbjct: 181 EVSVIGYIPYFGKPMNFLLLSLMYAYYCFEYKWNFFAVSLNERLDFFESNWAF---FAGF 237

Query: 604 GS 609
           GS
Sbjct: 238 GS 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,217,231
Number of Sequences: 37544
Number of extensions: 228583
Number of successful extensions: 530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)