Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_K17
(845 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.039
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.47
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 4.4
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 4.4
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 5.8
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 5.8
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 7.7
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 26 7.7
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 7.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.039
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = -2
Query: 724 SPLCIXPPXPAXSXTSTRSSNPXF-HTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEA 548
+P I PP P + S+ +S P H P+ P +S +P P + P + P LSS+A
Sbjct: 965 APPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLAR--VPPV-PKLSSKA 1021
Query: 547 PSAYLTPSSLG-MXKGGFAPLFSSE**ITSFAPY*-SSFHAYSAPPLQLTPSSKTSSWP 377
P L + + AP TS P SS A SAPP PSS+ S P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIP---TSTPPVPKSSSGAPSAPPPVPAPSSEIPSIP 1077
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.47
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = -2
Query: 706 PPXPAXSXTSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 527
PP PA + ++ SS+P T +T TS SI P P + PP S+ + S P
Sbjct: 316 PPPPASTSSTGTSSSPLPST-STSCTTSTSIPPTGNSTTPVTPTV-PPTSTSSTSTPPPP 373
Query: 526 SSLGMXKGGFAPLFSS 479
+S +PL S+
Sbjct: 374 ASTSSTGTSSSPLLST 389
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -2
Query: 706 PPXPAXSXTSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP 545
PP PA + ++ SS+P T +T TS SI P P + PP SS P
Sbjct: 370 PPPPASTSSTGTSSSPLLST-STSCTTSTSIPPTGNSTTPVTPTV-PPTSSSTP 421
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 99 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 227
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.5
Identities = 25/100 (25%), Positives = 41/100 (41%)
Frame = -2
Query: 682 TSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 503
TST ++ +TP +S +N TP A P++S + TP +
Sbjct: 1880 TSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLN 1939
Query: 502 GFAPLFSSE**ITSFAPY*SSFHAYSAPPLQLTPSSKTSS 383
P+ SS + S P SS S+ P+ + + TS+
Sbjct: 1940 SSTPITSST-VVNSSTPITSSSVLNSSTPITSSTALNTST 1978
Score = 27.5 bits (58), Expect = 2.5
Identities = 25/100 (25%), Positives = 41/100 (41%)
Frame = -2
Query: 682 TSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 503
TST ++ +TP +S +N TP A P++S + TP +
Sbjct: 2072 TSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLN 2131
Query: 502 GFAPLFSSE**ITSFAPY*SSFHAYSAPPLQLTPSSKTSS 383
P+ SS + S P SS S+ P+ + + TS+
Sbjct: 2132 SSTPITSST-VVNSSTPITSSSVLNSSTPITSSTALNTST 2170
Score = 26.6 bits (56), Expect = 4.4
Identities = 27/100 (27%), Positives = 41/100 (41%)
Frame = -2
Query: 682 TSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 503
TST ++ +TP +S +N TP A PP++S TP +
Sbjct: 1616 TSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVN 1675
Query: 502 GFAPLFSSE**ITSFAPY*SSFHAYSAPPLQLTPSSKTSS 383
P+ SS + S P SS ++ P +T SS +S
Sbjct: 1676 TSTPITSST-VVNSSTPITSSTALNTSTP--ITSSSVLNS 1712
Score = 26.2 bits (55), Expect = 5.8
Identities = 24/99 (24%), Positives = 39/99 (39%)
Frame = -2
Query: 682 TSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 503
TST ++ +TP +S +N TP P++S + TP +
Sbjct: 1184 TSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSILN 1243
Query: 502 GFAPLFSSE**ITSFAPY*SSFHAYSAPPLQLTPSSKTS 386
P+ SS + S P SS S+ P+ + + TS
Sbjct: 1244 SSTPITSSS-VLNSSTPITSSTVVNSSTPITSSTALNTS 1281
Score = 26.2 bits (55), Expect = 5.8
Identities = 22/90 (24%), Positives = 36/90 (40%)
Frame = -2
Query: 682 TSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 503
TST ++ +TP +S ++N TP P++S TP +
Sbjct: 1568 TSTPITSSSVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLN 1627
Query: 502 GFAPLFSSE**ITSFAPY*SSFHAYSAPPL 413
P+ SS + S P SS ++PP+
Sbjct: 1628 SSTPITSST-VLNSSTPITSSTALNTSPPI 1656
Score = 25.8 bits (54), Expect = 7.7
Identities = 26/100 (26%), Positives = 42/100 (42%)
Frame = -2
Query: 682 TSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 503
TST+ ++P +TP +S +N TP P++S + TP +
Sbjct: 368 TSTQITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSSTPITSSSILN 427
Query: 502 GFAPLFSSE**ITSFAPY*SSFHAYSAPPLQLTPSSKTSS 383
P+ SS + S P SS ++ P +T SS +S
Sbjct: 428 SSTPITSST-VLNSSTPITSSTALNTSTP--ITSSSVLNS 464
Score = 25.8 bits (54), Expect = 7.7
Identities = 23/100 (23%), Positives = 40/100 (40%)
Frame = -2
Query: 682 TSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKG 503
TST ++ +TP +S ++N TP P++S TP +
Sbjct: 1760 TSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLN 1819
Query: 502 GFAPLFSSE**ITSFAPY*SSFHAYSAPPLQLTPSSKTSS 383
P+ SS + + P SS S+ P+ + + TS+
Sbjct: 1820 SSTPITSST-VVNTSTPITSSTVVNSSTPITSSTALNTST 1858
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 254 CYFSTPPFDTILYDNIRTVLKDNKTALLSASI 159
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.6 bits (56), Expect = 4.4
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = -1
Query: 353 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTILYDNIRTVLKDNKTAL 174
K K+ D V K + +S T+ +V + YF PF+ ++ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 173 LSASIQASLPSSEIYRQL 120
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 464 KLRALLVVIPRILRSPPPTHPLIEDV 387
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 5.8
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -2
Query: 706 PPXPAXSXTST-RSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLT 530
PP P ST RSS+P + T D + ++ +PY AP + L E P
Sbjct: 306 PPKPPLRKVSTQRSSSPIENLATKSDASLVTGLQSSPY-THIAPASEMSLIPEKPRLPPR 364
Query: 529 PS 524
PS
Sbjct: 365 PS 366
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 469 ITSFAPY*SSFHAYSAPPLQLTPSSKTSS 383
+ SF PY S F A P L ++PS+ +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 141 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 43
L++L +G SPC RL L +++P FW
Sbjct: 21 LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 619 SINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGGFAPLF 485
S+NP TP +P + PP+S+ +P P S G AP F
Sbjct: 271 SLNPSTPSPFGGSPVMHPPVSNLSPRTPAVPMS---SDGHLAPAF 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,123
Number of Sequences: 5004
Number of extensions: 57048
Number of successful extensions: 238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -