Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_K13
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   343   1e-96
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   343   1e-96

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  343 bits (843), Expect = 1e-96
 Identities = 158/201 (78%), Positives = 173/201 (86%)
 Frame = -3

Query: 778 NXXKVXRYFPTQXXXXAFKDKYKQVFXGGVDKKTQFWRXFXGNXAXXGAAGATSLCFVYP 599
           N   V RYFPTQ    AFKDKYKQVF GGVDK TQF R F GN A  GAAGATSLCFVYP
Sbjct: 76  NLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYP 135

Query: 598 LDFARTRXAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFG 419
           LDFARTR AADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFG
Sbjct: 136 LDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFG 195

Query: 418 XYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKN 239
            YDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+
Sbjct: 196 FYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKS 255

Query: 238 TIHCWATIAKTEGTSAFXQGS 176
           T+HCWATI KTEG +AF +G+
Sbjct: 256 TLHCWATIYKTEGGNAFFKGA 276



 Score = 29.9 bits (64), Expect = 0.028
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -2

Query: 149 GGAFVLVLYDEIKKVL 102
           GGA VLVLYDEIK +L
Sbjct: 285 GGALVLVLYDEIKNLL 300



 Score = 26.2 bits (55), Expect = 0.34
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 355 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFXQ 182
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++ +
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 181 GSL 173
           G+L
Sbjct: 75  GNL 77



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -1

Query: 183 KGAFSNVLRG 154
           KGAFSN+LRG
Sbjct: 274 KGAFSNILRG 283


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  343 bits (843), Expect = 1e-96
 Identities = 158/201 (78%), Positives = 173/201 (86%)
 Frame = -3

Query: 778 NXXKVXRYFPTQXXXXAFKDKYKQVFXGGVDKKTQFWRXFXGNXAXXGAAGATSLCFVYP 599
           N   V RYFPTQ    AFKDKYKQVF GGVDK TQF R F GN A  GAAGATSLCFVYP
Sbjct: 76  NLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAAGATSLCFVYP 135

Query: 598 LDFARTRXAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFG 419
           LDFARTR AADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFG
Sbjct: 136 LDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFG 195

Query: 418 XYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKN 239
            YDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+
Sbjct: 196 FYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKS 255

Query: 238 TIHCWATIAKTEGTSAFXQGS 176
           T+HCWATI KTEG +AF +G+
Sbjct: 256 TLHCWATIYKTEGGNAFFKGA 276



 Score = 29.9 bits (64), Expect = 0.028
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -2

Query: 149 GGAFVLVLYDEIKKVL 102
           GGA VLVLYDEIK +L
Sbjct: 285 GGALVLVLYDEIKNLL 300



 Score = 26.2 bits (55), Expect = 0.34
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 355 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFXQ 182
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++ +
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 181 GSL 173
           G+L
Sbjct: 75  GNL 77



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -1

Query: 183 KGAFSNVLRG 154
           KGAFSN+LRG
Sbjct: 274 KGAFSNILRG 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,868
Number of Sequences: 438
Number of extensions: 3711
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)