Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_K12
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   158   7e-40
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   156   3e-39
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.3  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.3  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   7.0  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  158 bits (384), Expect = 7e-40
 Identities = 81/145 (55%), Positives = 97/145 (66%)
 Frame = -2

Query: 763 CVXXSHHGPFGQRAVTEVCRAHPVLRXLRDVSXPGAFTNQIQAAFREPRLLIVLDPAQDH 584
           CV  S   P+G RAV +   AH     +     PG FTN I   +REPRL+IV DP  D 
Sbjct: 78  CVISSR--PYGHRAVLKFA-AHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADA 134

Query: 583 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 404
           Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R
Sbjct: 135 QAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISR 194

Query: 403 DQRWDVVVDLFFYHDPEESEKDEQQ 329
              W+V+ DL+FY DPEE E++E+Q
Sbjct: 195 TTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  156 bits (379), Expect = 3e-39
 Identities = 77/135 (57%), Positives = 93/135 (68%)
 Frame = -2

Query: 736 FGQRAVTEVCRAHPVLRXLRDVSXPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYV 557
           +G RAV +   AH     +     PG FTN I   +REPRL++V DP  D Q I EAS+V
Sbjct: 84  YGHRAVLKFA-AHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFV 142

Query: 556 NIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVD 377
           NIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ D
Sbjct: 143 NIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPD 202

Query: 376 LFFYHDPEESEKDEQ 332
           L+FY DPEE E++E+
Sbjct: 203 LYFYRDPEEVEREEE 217


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -2

Query: 622 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 443
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 442 AR 437
           +R
Sbjct: 240 SR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +3

Query: 372 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 470
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 574 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = -2

Query: 526 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYHD--PE 353
           ++  R + +   C   SSH     W    REV   R  + R   W +  +   YHD  P 
Sbjct: 450 NTKFRLIHVFANCELMSSHRRFPDWGDYQREVTCCRNCVERSTTWFIESN---YHDGLPS 506

Query: 352 ESEK 341
           +S K
Sbjct: 507 DSRK 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,848
Number of Sequences: 5004
Number of extensions: 56523
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)