Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_K11
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   130   2e-31
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   126   3e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   3e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    30   0.47 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.9  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    27   4.4  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    26   5.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.8  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  130 bits (314), Expect = 2e-31
 Identities = 61/92 (66%), Positives = 71/92 (77%)
 Frame = -2

Query: 633 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 454
           +RE RL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177

Query: 453 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 358
           +LLAREVLR+RG L R   WDV+ DL+FYRDP
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = -1

Query: 754 VIXSRPFGQRAVXKFXAHTGATXIAGRFTPGAFTNQIQAAF 632
           V+ +R +G RAV KF AHTGAT IAGRFTPG FTN I   +
Sbjct: 78  VVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 118


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  126 bits (305), Expect = 3e-30
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = -2

Query: 633 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 454
           +RE RL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178

Query: 453 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 358
           +LLAREVLRLRG + R   W+V+ DL+FYRDP
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 29/41 (70%), Positives = 31/41 (75%)
 Frame = -1

Query: 754 VIXSRPFGQRAVXKFXAHTGATXIAGRFTPGAFTNQIQAAF 632
           VI SRP+G RAV KF AHTGAT IAGRFTPG FTN I   +
Sbjct: 79  VISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 119


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = -2

Query: 660 LLLTRSKLHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 481
           L+ T  K  +    L+++L+P ++     EA   ++P I + +TD+  R V   IP N  
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227

Query: 480 SSHSIGLMWWLLAR 439
           S     L+  LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 353 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 472
           L  S+  N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 99  LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 576 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 466
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 422 VVCFPVTSAGMLWLICSSTVTPEESEKD 339
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = -2

Query: 759 VLXFXHGPSVSVLX*SXPRTPVLRXLRDASHQVLLLT-----RSKLHFREXRLLIVLDPA 595
           V  F +   + V+  S P TP LR L+  S    LLT     R+KL+     +L+ + P 
Sbjct: 251 VRTFGNFADILVINVSSPNTPGLRNLQKKSALSTLLTAVVSERNKLNSPHPPVLVKIAPD 310

Query: 594 QDHQPITEASYV 559
            + + +T+ + V
Sbjct: 311 LNEEELTDIADV 322


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -2

Query: 678 DASHQVLLLTRSKLHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 505
           + + ++ L      HF   +LL+VL     H   T   Y  I  I   NT+  LRF D
Sbjct: 249 ETAQKIFLSLCFSQHFPSEKLLMVL---LLHGTETMQEYAMIQAINFVNTEQKLRFYD 303


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 468 IGLMWWLLAREVLRLRGVLPRDQRWD 391
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,070
Number of Sequences: 5004
Number of extensions: 54255
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)