Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_K10
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    95   1e-20
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    31   0.26 
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    27   4.2  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   4.2  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    27   4.2  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.6  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    26   7.4  

>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 44/106 (41%), Positives = 69/106 (65%)
 Frame = -3

Query: 342 GMTRVLLTRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQDLNRQV 163
           G T++LLT IP+++ VV+MSF C  CG++N ++Q     +  G +    VE ++DLNR V
Sbjct: 45  GTTKLLLTVIPYFREVVLMSFECPHCGFKNAQVQHAETIQPEGSKITFHVEDKEDLNRTV 104

Query: 162 VKSDYTSIRIPELDFEIAAQSQKGEVTTVEGIISRAITGLNQDQES 25
           VKS    + IPE+  EI    + G++TT+EGI+S  +  L+++QES
Sbjct: 105 VKSQEAIVSIPEIQLEI--PGRLGQLTTIEGILSNVVDDLSKEQES 148



 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 37/93 (39%), Positives = 62/93 (66%)
 Frame = -3

Query: 336 TRVLLTRIPHYKNVVIMSFSCEECGYQNNEIQPGGEYEELGVRWKLRVESQQDLNRQVVK 157
           T + L  IPH+K V+IMS  C+ CGY++NE++ GGE    G +  L+V   +DL+R ++K
Sbjct: 268 THMKLLDIPHFKEVIIMSTVCDRCGYRSNEVKTGGEIPPKGRKITLKVMDAEDLSRDILK 327

Query: 156 SDYTSIRIPELDFEIAAQSQKGEVTTVEGIISR 58
           S+  S++IPEL  ++   +  G  TT+EG++++
Sbjct: 328 SETASLKIPELGLDLFPGTLGGRFTTIEGLLAQ 360


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 543 NTFKLCFLAYSSTIIFPSXISLKPHPSRC 629
           N FK    AY  +++F   I+LKPH   C
Sbjct: 5   NVFKAVLCAYFISVVFGHGITLKPHQREC 33


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 204 KLRVESQQDLNRQVVKSDYTSIRIPELDFEIAAQSQKGEVTTVEGIISR 58
           KL  +++    + ++K  +TS  I +LDF     S + E   V+ I SR
Sbjct: 371 KLSWDAEDPHRKDLIKKAFTSQDIEDLDFSAYIASSESEDEDVDVIRSR 419


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 376 GNICCRNIGSMGYDQGVAHQDTALQECSDHVI 281
           G   CRNIG  G    V   D+ +    DHVI
Sbjct: 228 GGATCRNIGYKGQGICVYTNDSRIPVADDHVI 259


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 308 CGILVSNTLVIPHRSNVTTTN 370
           CG+L+ N + +P+ SN+ +TN
Sbjct: 584 CGLLLPNQVSMPNISNIVSTN 604


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = -3

Query: 228 YEELGVRWKLRVESQQDLNRQVVKSDYTSIRIPELDFEIAAQSQKGEV 85
           +  L V W  RV  Q  L+   + +D   +   + DF+ +  +  G +
Sbjct: 120 FHVLSVNWSARVIEQTLLHHTDLTADLLCVHANDFDFDTSTNTTNGRI 167


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 537 PSNTFKLCFLAYSSTIIFPSXISLKPHPSRCGR 635
           P+ TFK+C    +STII P+  +++   S   R
Sbjct: 485 PTETFKVCSERLTSTIIAPARTAVEAKESEHDR 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,455
Number of Sequences: 5004
Number of extensions: 56721
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)