Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_K05
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    33   0.066
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.81 
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    27   2.5  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   4.3  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   7.5  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   10.0 

>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 32.7 bits (71), Expect = 0.066
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -2

Query: 365 LARSPAIGSRVMADRVPPTALGEGVTRRHQSGLSAR*NEGTGGRVA 228
           LA  P++     AD+  P+   E +TR++  G+S R +E T  ++A
Sbjct: 209 LASRPSLPDLTSADKSQPSDEAESITRKNSIGMSTRSDESTAEKLA 254


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 161 DRVDTEHITSIPPSHGRRTGGHQRHDHRFPRFSGPRARFDGAALHLPPERSGE 319
           ++ +  ++T      GRRT   + +D  F ++SG + R++    H+ P  S E
Sbjct: 499 EQENAANVTRSQAQEGRRTDMQKGNDREFRQYSGEQ-RYERCGFHITPCNSEE 550


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 165 GLTQSTLHPSHRPTDAGPVATSDTTTGSLVSAGREPALMAPRYTFPQS 308
           GL    ++P  RP+  GP +TS     +    G  P L  P  + P+S
Sbjct: 136 GLINYNVNPDTRPSKIGPPSTSHFQILADTPRGLVPLLPPPSSSIPRS 183


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +3

Query: 171 TQSTLHPSHRPTDAGPVA------TSDTTTGSLVSAGREPALMA-PRYTFPQS 308
           +Q T H +H P   GP++      +S  T G+  +A   P+L A P  + PQS
Sbjct: 293 SQPTTHDTHPPKQQGPISDFRSIPSSPKTEGAPSNAQFRPSLPATPNGSVPQS 345


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
 Frame = +3

Query: 105 TGALPRTGPEPSRGY*NGGTGLTQSTLHPSHRPTDAGPVA------TSDTTTGSLVSAGR 266
           T   P T P PS            ST +PS  P  A P+A      T++ T GS  S+  
Sbjct: 370 TNPAPSTFPNPSVA---SPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSS 426

Query: 267 EPALMAP 287
            P   +P
Sbjct: 427 NPRTSSP 433


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +2

Query: 548 RRSRA*PSMTHRXQASMPRRQAATSQVLSLRPGHGAAPPKRGRQRXYAPPLSXRVTM 718
           +R R  P      + S  +   +   VL  + G G  P  R  Q+    P+S  VT+
Sbjct: 201 KRGRGRPRKIKPEEGSSSQNGLSPLVVLPAKRGRGRPPLHRSEQKIANTPISNNVTV 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,311
Number of Sequences: 5004
Number of extensions: 68187
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)