Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_K01
         (1090 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    30   2.5  
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    29   5.8  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    29   5.8  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    29   5.8  
AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    29   7.7  
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    29   7.7  

>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -2

Query: 636 GPKGPXNGETPPPRGKIWGKKXVSPPRXGXXSPXXGGXXP 517
           GP  P NG  P P G+  G   V PP     +P  GG  P
Sbjct: 731 GPMPPLNGTAPLPSGQQNGMN-VPPPNGFNGAPMRGGFVP 769


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
            protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 19/68 (27%), Positives = 19/68 (27%)
 Frame = -2

Query: 1014 GGGGXXFXWGXPXXXVXXXFXXXPXGGGGXXXXXXXXXXXXXXXXGGXLXGGGXXXXXXX 835
            GGGG    WG P           P GGG                 GG    GG       
Sbjct: 221  GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 280

Query: 834  GGXXXXGG 811
            GG    GG
Sbjct: 281  GGWGQQGG 288


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
            homolog protein1, isoform c protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 19/68 (27%), Positives = 19/68 (27%)
 Frame = -2

Query: 1014 GGGGXXFXWGXPXXXVXXXFXXXPXGGGGXXXXXXXXXXXXXXXXGGXLXGGGXXXXXXX 835
            GGGG    WG P           P GGG                 GG    GG       
Sbjct: 183  GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 242

Query: 834  GGXXXXGG 811
            GG    GG
Sbjct: 243  GGWGQQGG 250


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
            homolog protein1, isoform a protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 19/68 (27%), Positives = 19/68 (27%)
 Frame = -2

Query: 1014 GGGGXXFXWGXPXXXVXXXFXXXPXGGGGXXXXXXXXXXXXXXXXGGXLXGGGXXXXXXX 835
            GGGG    WG P           P GGG                 GG    GG       
Sbjct: 221  GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 280

Query: 834  GGXXXXGG 811
            GG    GG
Sbjct: 281  GGWGQQGG 288


>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
            homolog protein1, isoform b protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
 Frame = -2

Query: 1014 GGGGXXFXWGXPXXXVXXXFXXXPXGGGGXXXXXXXXXXXXXXXXGGXLXG-GGXXXXXX 838
            GGGG    WG P           P GGG                 GG   G GG      
Sbjct: 183  GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQG 242

Query: 837  XGGXXXXGG 811
             GG    GG
Sbjct: 243  GGGWGQQGG 251


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
            homolog protein1, isoform d protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 20/69 (28%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
 Frame = -2

Query: 1014 GGGGXXFXWGXPXXXVXXXFXXXPXGGGGXXXXXXXXXXXXXXXXGGXLXG-GGXXXXXX 838
            GGGG    WG P           P GGG                 GG   G GG      
Sbjct: 221  GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQG 280

Query: 837  XGGXXXXGG 811
             GG    GG
Sbjct: 281  GGGWGQQGG 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,962,632
Number of Sequences: 27780
Number of extensions: 240163
Number of successful extensions: 725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2929426640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)