Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_J24
(895 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 34 0.61
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 34 0.61
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 34 0.61
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 34 0.61
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 34 0.61
BC073988-1|AAH73988.1| 682|Homo sapiens FMNL1 protein protein. 33 1.4
AY278319-1|AAP32476.1| 1100|Homo sapiens leukocyte formin protein. 33 1.4
AF432213-1|AAL99920.1| 991|Homo sapiens CLL-associated antigen ... 33 1.4
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 34.3 bits (75), Expect = 0.61
Identities = 23/78 (29%), Positives = 26/78 (33%)
Frame = +2
Query: 506 VVGPPXGXAXAXRPQXSPXXPPGXXXXPXXHPXSPGXXXRXXXWAXXPXKXPPXXGPXPX 685
+ GPP P P P G P P PG + P PP GP P
Sbjct: 263 LAGPPNRGDRPPPPVLFPGQPFGQ---PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPP 319
Query: 686 PXXGXXSXLXPGPXPPXI 739
P G PGP P +
Sbjct: 320 P--GPFPPRPPGPLGPPL 335
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 34.3 bits (75), Expect = 0.61
Identities = 23/78 (29%), Positives = 26/78 (33%)
Frame = +2
Query: 506 VVGPPXGXAXAXRPQXSPXXPPGXXXXPXXHPXSPGXXXRXXXWAXXPXKXPPXXGPXPX 685
+ GPP P P P G P P PG + P PP GP P
Sbjct: 263 LAGPPNRGDRPPPPVLFPGQPFGQ---PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPP 319
Query: 686 PXXGXXSXLXPGPXPPXI 739
P G PGP P +
Sbjct: 320 P--GPFPPRPPGPLGPPL 335
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 34.3 bits (75), Expect = 0.61
Identities = 23/78 (29%), Positives = 26/78 (33%)
Frame = +2
Query: 506 VVGPPXGXAXAXRPQXSPXXPPGXXXXPXXHPXSPGXXXRXXXWAXXPXKXPPXXGPXPX 685
+ GPP P P P G P P PG + P PP GP P
Sbjct: 190 LAGPPNRGDRPPPPVLFPGQPFGQ---PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPP 246
Query: 686 PXXGXXSXLXPGPXPPXI 739
P G PGP P +
Sbjct: 247 P--GPFPPRPPGPLGPPL 262
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 34.3 bits (75), Expect = 0.61
Identities = 23/78 (29%), Positives = 26/78 (33%)
Frame = +2
Query: 506 VVGPPXGXAXAXRPQXSPXXPPGXXXXPXXHPXSPGXXXRXXXWAXXPXKXPPXXGPXPX 685
+ GPP P P P G P P PG + P PP GP P
Sbjct: 300 LAGPPNRGDRPPPPVLFPGQPFGQ---PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPP 356
Query: 686 PXXGXXSXLXPGPXPPXI 739
P G PGP P +
Sbjct: 357 P--GPFPPRPPGPLGPPL 372
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 34.3 bits (75), Expect = 0.61
Identities = 23/78 (29%), Positives = 26/78 (33%)
Frame = +2
Query: 506 VVGPPXGXAXAXRPQXSPXXPPGXXXXPXXHPXSPGXXXRXXXWAXXPXKXPPXXGPXPX 685
+ GPP P P P G P P PG + P PP GP P
Sbjct: 263 LAGPPNRGDRPPPPVLFPGQPFGQ---PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPP 319
Query: 686 PXXGXXSXLXPGPXPPXI 739
P G PGP P +
Sbjct: 320 P--GPFPPRPPGPLGPPL 335
>BC073988-1|AAH73988.1| 682|Homo sapiens FMNL1 protein protein.
Length = 682
Score = 33.1 bits (72), Expect = 1.4
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +2
Query: 545 PQXSPXXPPGXXXXPXXHPXSPGXXXRXXXWAXXPXKXPPXXG-PXPXPXXGXXSXLXPG 721
P +P P P P PG P + PP G P P P L P
Sbjct: 110 PDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPP 169
Query: 722 PXPP 733
P PP
Sbjct: 170 PPPP 173
>AY278319-1|AAP32476.1| 1100|Homo sapiens leukocyte formin protein.
Length = 1100
Score = 33.1 bits (72), Expect = 1.4
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +2
Query: 545 PQXSPXXPPGXXXXPXXHPXSPGXXXRXXXWAXXPXKXPPXXG-PXPXPXXGXXSXLXPG 721
P +P P P P PG P + PP G P P P L P
Sbjct: 528 PDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPP 587
Query: 722 PXPP 733
P PP
Sbjct: 588 PPPP 591
>AF432213-1|AAL99920.1| 991|Homo sapiens CLL-associated antigen
KW-13 protein.
Length = 991
Score = 33.1 bits (72), Expect = 1.4
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Frame = +2
Query: 545 PQXSPXXPPGXXXXPXXHPXSPGXXXRXXXWAXXPXKXPPXXG-PXPXPXXGXXSXLXPG 721
P +P P P P PG P + PP G P P P L P
Sbjct: 419 PDLAPAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPP 478
Query: 722 PXPP 733
P PP
Sbjct: 479 PPPP 482
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,681,029
Number of Sequences: 237096
Number of extensions: 1224965
Number of successful extensions: 3495
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3349
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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