Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_J22
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 340 CKGYWI*WIRKDVSRPSPVTGSCVIRIRE 426
           CKG++   +RKD+S       SC+I  R+
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCIIDKRQ 158


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 340 CKGYWI*WIRKDVSRPSPVTGSCVIRIRE 426
           CKG++   +RKD+S       SC+I  R+
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCIIDKRQ 158


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 59  NWEGLRA-TSNPSIIKK 12
           NWEGLRA T  P I+ +
Sbjct: 630 NWEGLRARTLEPPIMPR 646


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 299 SLSLLPVLELKASSAKVIGSDGSV 370
           S  +LP+  L   S K+  S GSV
Sbjct: 61  SFKILPIEPLAVDSVKIGESQGSV 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,854
Number of Sequences: 438
Number of extensions: 3579
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)