Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_J17
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...   182   4e-47
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    34   0.027
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        29   1.0  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   1.0  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    28   1.8  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    27   3.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   4.0  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    26   5.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.1  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   7.1  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.1  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    26   7.1  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    26   7.1  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   7.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   9.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   9.4  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   9.4  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score =  182 bits (444), Expect = 4e-47
 Identities = 78/118 (66%), Positives = 103/118 (87%)
 Frame = -2

Query: 691 NHXDETYLRRVIKPLEGLLIAYKRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIV 512
           N  DE+YLRRVI+PLE LL+ YKRI +KDSAVNA+CYGAK+++PG+LRYE GIEV++EIV
Sbjct: 250 NTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIV 309

Query: 511 IVTTKGEAVALAVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKIL 338
           ++TTKGEA+A+ +A M+T  +++CDHGV AK+KR IMERD YPR+WGLGP++ +KK L
Sbjct: 310 LITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTL 367



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 20/33 (60%), Positives = 28/33 (84%)
 Frame = -3

Query: 351 RKKSSYKQGKLDKYGKPNENTPKEWLNSYVNYN 253
           +KK+  K+GKLDKYG+PNENTP +W  SY++Y+
Sbjct: 363 KKKTLKKEGKLDKYGRPNENTPADWSKSYIDYS 395



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = -3

Query: 765 RSGIQGEKEGMVTMHDILDAQWSYETTK 682
           RSG   E + +VTMHD+LDAQW Y+ T+
Sbjct: 225 RSGCLSENDDIVTMHDVLDAQWIYDNTR 252


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
 Frame = -3

Query: 366 DRKPHRKKSSYKQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRKRTAST 187
           D     + +S +  K D      E++ +E  +S  + + ++E E+ +   E  +K+  + 
Sbjct: 18  DSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKK--AV 75

Query: 186 ANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDT---SESPETAEQPADDSVR 28
           A +ED +   E  +E      + DSE   E+++  ++   SE    +E+ +D+S R
Sbjct: 76  AASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESER 131


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 238 RFFLNIIVD-VTV*PFFWCVLIWFA-IFVKFPLFV*GFFSVRLSVRDPIFWGTCLVPL*H 411
           RF+L+   D + + P  W   ++ + +F + P F+     +R   RDP+ W   L+   H
Sbjct: 62  RFYLSTYEDPILLIPAPWKTALFSSELFFQVPFFIWVSLRLRKKARDPVLWVAILIYGVH 121

Query: 412 A 414
           A
Sbjct: 122 A 122


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -3

Query: 237 ENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPET 58
           E  + VE+   K+  S+ ++ D + S +   E        DSE+ + ++        P +
Sbjct: 186 EEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPAS 245

Query: 57  AEQPA 43
            E+PA
Sbjct: 246 EERPA 250


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -3

Query: 351 RKKSSYKQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAED 172
           ++  SY+  K     +  +  PK + N+    N+KK   +GD     +  R A+ A+A D
Sbjct: 256 KESKSYENSKALNSAEGKD--PKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAAD 313

Query: 171 PDVSIEVKQ 145
            +V    KQ
Sbjct: 314 AEVDNIEKQ 322


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = -3

Query: 330 QGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRK 202
           QG+LD + KP  ++PK+ +++    + K++ ++  G E   ++
Sbjct: 338 QGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 393 SRSIMTRLSFAATP*SH-EAIVDVVIRATANATASPLVVTITISWSTSMPS--SYLKIPG 563
           S   +T +S  +T  ++  + VD+    TA++T        T+S+ST +P+  S L  P 
Sbjct: 213 SSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPA 272

Query: 564 NS 569
           +S
Sbjct: 273 SS 274


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
 Frame = -3

Query: 321 LDKYGKP--NENTPKEWLNSYVNYNV-------KKEPENGDGVEEGSRKRTASTANAEDP 169
           +D+YG+P   +   KE    Y   N          E  + + V   S K T S    ++ 
Sbjct: 65  VDRYGRPLNQDKATKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEE 124

Query: 168 DVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAE 52
               EV            SE+  E+DA  +T   PE +E
Sbjct: 125 SEDEEVYDPARGEGIISTSESSDESDAESETEAQPEISE 163


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 381  ENGVSDRKPHRKKSSYKQGKLDKYGKPNENTPKE 280
            +N  S+RKP   ++  K  K   Y  P+E T K+
Sbjct: 923  KNDTSNRKPFGAENQSKLKKNSFYDNPSETTEKD 956


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 279 ILLVCSHLVCHICQVSLVC 335
           I LVC  L C +C VS++C
Sbjct: 26  IFLVCYPLYCVVCFVSVLC 44


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 399 NETRTPENGVSDRKPHRKKSSYKQGK 322
           ++T+T  + VSD K   KKS +K GK
Sbjct: 30  SDTKTLYSSVSDSKIGHKKSFHKDGK 55


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -3

Query: 246 KEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADA----TMD 79
           KE E  DG+++ S + +    + E P+              ++++EA  E  A      +
Sbjct: 282 KESETIDGIDDKSLRSSTREVSVESPNEDSVNDDSSSDVSDEKETEAKHEIRAPAIIVRE 341

Query: 78  TSESPETAEQPADDS 34
           TS  P TA    +D+
Sbjct: 342 TSSHPSTAVPSENDT 356


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 369 SDRKPHRKKSSYKQGKLDKYGKPNENTPKEWLNSYVNYNVKKE 241
           ++ K  R   S + G LDK  KPN    KE L S ++Y   +E
Sbjct: 240 AELKHRRLVRSQRNGPLDKDLKPNSKIRKE-LESILSYPPSEE 281


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 390 RTPENGVSDRKPHRKKSSYKQGKLDKYGK 304
           RTPE    D+K + KK   ++ K   +GK
Sbjct: 570 RTPEEIARDKKKYGKKKRLREWKKQVFGK 598


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 273 NSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDV 163
           N YV+ N   E  +GD + E  R R +     ++ D+
Sbjct: 3   NEYVDMNSSSEDSDGDSILEEGRLRPSFRGQQKERDM 39


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 292 VLIWFAIFVKFPLFV*GFFSVRLSVRDPI 378
           V+IW  +F     F   +F + LS+RDPI
Sbjct: 687 VIIWVCVFTC--KFAESYFFLTLSIRDPI 713


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 298 IWFAIFVKFPLFV*GFFSVRLSVRDPI 378
           +W  +F+    FV  ++ + LSVRDPI
Sbjct: 599 LWITVFIA--KFVESYYFLTLSVRDPI 623


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 369  SDRKPHRKKSSYKQGKLDKYGKPNENTPKEWLNSY--VNYNVKKEPENGDGVEE 214
            SD+K  R++ + K+ KL++      N P+   + +  +  N  + P + + + E
Sbjct: 1136 SDKKSSRRRKNEKRRKLNEQNPNIRNVPERSSSRFQGIRINYSEAPSSSEEISE 1189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,711
Number of Sequences: 5004
Number of extensions: 56618
Number of successful extensions: 200
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)