Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_J05
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    30   0.43 
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   1.3  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    28   1.3  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    27   3.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   3.0  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   7.0  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   9.3  

>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
 Frame = -1

Query: 610 PKVRAKKSKDSPVPRKRRKVDAPEANERQLRSRGKRSTPATPVVEKRGKA-DGRVTKESI 434
           PK RA+K++ +   ++  +    +A E +  S+G ++       EKR  A + +  +E +
Sbjct: 4   PKKRAEKAEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAALERKAERERL 63

Query: 433 ENEXXXXXXXXXXXRGDNQAGAQGEGAKRTRHETSQRTQNDQSEEKGNFDLESTGRSDAH 254
           E E           +G  +A  +        +ET Q             DL S   S + 
Sbjct: 64  EKE-EMESLPSKGGKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSK 122

Query: 253 DEV 245
           D++
Sbjct: 123 DKI 125


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 643  HKGLDGTQVAFPKVRAKKSKDSPVPRKRRKVDAPEANERQLRSR 512
            +K L   +    +V A+ S +     +RR+   PE N R LR+R
Sbjct: 1362 NKNLVENKAVEKRVEARSSANERKQEERRRKTTPEGNRRALRTR 1405


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 631 DGTQVAFPKVRAK-KSKDSPVPRKRRKVDAPEANER-QLRSRGKRSTPATP 485
           +G  V  PKV    KS DSPV +     D P A+ R  +RS G  S    P
Sbjct: 190 NGPNVRSPKVGFNAKSDDSPVVKSPGSNDKPSASPRISVRSLGNSSVVRPP 240


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -1

Query: 604 VRAKKSKDSP-VP---RKRRKVDAPEANERQLRSRGKR 503
           + + +S DS  +P   RKRRKV  PE  +  LR RG++
Sbjct: 64  IASSQSNDSAAIPSYRRKRRKVRKPEIVKPTLRKRGRK 101


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 339  TRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSE 205
            T    E   I   K+ T T+N+  +Q+ M +S     E SLS +E
Sbjct: 1611 TEWLQEEVNIMKIKELTSTVNKYREQLAMVQSLNEHAESSLSKAE 1655


>SPBC17D11.05 |tif32||translation initiation factor
            eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
 Frame = -3

Query: 701  EKTYAKTRXQARR-LHXHREP*RSGRHPGRLPESASEEVQGLARAAQEEKSRRTRG**KA 525
            +K Y +   +A+  +   RE  R      +L E+  E  +  ARAA+EE +R      + 
Sbjct: 756  DKAYQEAYAKAKNVIDAERERQRKEIFEQKLAEAIREAEEEAARAAEEEANRELHE--QE 813

Query: 524  VAQSR-*EKHPRHSRG*EARKGRR*SHQGVDRERKNGPRHSQE 399
             AQ R  E+  R +R  + R+ R  + + ++R+R+      +E
Sbjct: 814  EAQKRAIEERTRAAREAKEREQREMAEK-LERQRRIQQERDEE 855


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -2

Query: 345 RATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSEVKS 196
           R   +  E+K +++ +KE  + N +  Q+  +  ++ R+    SPS++KS
Sbjct: 21  RQLNEIQEKKRLRSAQKEASSENAEVIQVPRSPPQQVRVLTVSSPSKLKS 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,687
Number of Sequences: 5004
Number of extensions: 42692
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)