Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_J05
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.2  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   5.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   5.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   7.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 261 MRMTRSRKRRLEVSLSPSEVKS 196
           M+ T   K++ + SLSPSE +S
Sbjct: 534 MKETEEEKKKTKQSLSPSENQS 555


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 378 WLSPRYFLLRVTRTVF-SFSIDSLVTLPSAFPRF 476
           WL P Y ++RV +T   +  I S +  P  F  F
Sbjct: 344 WLDPEYPMIRVHKTQSQTIDIYSRIGFPILFMLF 377


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = -2

Query: 366 REKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSEV 202
           R++    R   Q S +   + +K    +  +  D+    RSR+ ++  SLS + +
Sbjct: 35  RKRNSRSREREQNSYKNEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTI 89


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = -2

Query: 366 REKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSEV 202
           R++    R   Q S +   + +K    +  +  D+    RSR+ ++  SLS + +
Sbjct: 35  RKRNSRSREREQNSYKNEREYRKYRETSKERSRDRAERERSREPKIISSLSNNTI 89


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 366 REKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLS 214
           R++    R   Q S +   K +K    +  +  D+    RSR+ ++  SLS
Sbjct: 36  RKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLS 86


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 366 REKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLS 214
           R++    R   Q S +   K +K    +  +  D+    RSR+ ++  SLS
Sbjct: 36  RKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLS 86


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = -2

Query: 366 REKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLSPSEV 202
           R++    R   Q S +     +K    +  +  D++   RSR+ ++  SLS + +
Sbjct: 269 RKRYSRSREREQRSYKNENSYRKYRETSKERSRDRIERERSREPKIISSLSNNTI 323


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -2

Query: 366 REKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSLS 214
           R++    R   Q S +   + +K    +  +  D+M   RS++ ++  SLS
Sbjct: 258 RKRYSRSREREQKSYKNEREYRKYGKTSKERSRDRMERERSKEPKIISSLS 308


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 522 CAVAVREAPPPLPWLRSEERP 460
           C VA  + P  + WL+  + P
Sbjct: 632 CGVAAGDPPLTISWLKDGQSP 652


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,637
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)