Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_J02
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    30   0.44 
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    28   1.3  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    28   1.3  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    28   1.3  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   3.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.1  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.1  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   9.4  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.4  

>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -3

Query: 679 QPDHQ-IPXFHTPTTPDLTSISINPLTP-X*KEFAPGLKPPLSSEAPSAYLTPSSLGMXK 506
           QP HQ    FHTPT P  T +S    +P    +    +  PLS +A S  LT S L   +
Sbjct: 130 QPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTSSPLKDFQ 187

Query: 505 GVSPPYFQVNDESQA 461
             SPP   V  +S +
Sbjct: 188 S-SPPLSTVLQKSHS 201


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 100 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 228
           R +A  Y+  + LGG++ S+    EK  F  + N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 470 ITSFAPYQSSFHAYSAPPLQLTPSSKTSS 384
           + SF PY+S F A   P L ++PS+  +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -3

Query: 721 PYASXHPSLRXRXHQPDHQIPXFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPS 542
           P+A+  PSL    +   H  P   +P   +  + S+NP TP     +P + PP+S+ +P 
Sbjct: 243 PFATRRPSL----NTDHHGRPILLSPL--NYQNSSLNPSTPSPFGGSPVMHPPVSNLSPR 296

Query: 541 AYLTPSS 521
               P S
Sbjct: 297 TPAVPMS 303


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 255 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 160
           CY   P + + L ++I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -1

Query: 354 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 175
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664

Query: 174 LSASIQASLPSSEIYRQL 121
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 142 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 44
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 330 LVTHKELALKVSSIIGTRVYVFDPSCY 250
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 115 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 216
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,120
Number of Sequences: 5004
Number of extensions: 57949
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)