Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_J01
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 107 2e-24
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 105 7e-24
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.3
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 2.9
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 27 3.8
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 25 8.8
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 107 bits (256), Expect = 2e-24
Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Frame = -1
Query: 669 PGVEXXXXXXXXXXXLAPGGHLGRFVXWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 490
PGVE LAPGGHLGRFV WT+SAFG LD +FGS ++ KKN+ LP+ +
Sbjct: 225 PGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENII 284
Query: 489 ANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVXEEESYLR 316
+N D+TRL+ SDEI+ +++A RV RA +K NPL N + +LNPYA + L
Sbjct: 285 SNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYKANVKLN 344
Query: 315 AAQKEELEG 289
+ + G
Sbjct: 345 TGKTPKAAG 353
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 752 NRXCIQRKGPXIIFXQDXG 696
NR +QR+GP ++F +D G
Sbjct: 198 NRRHVQRRGPLVVFNEDAG 216
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 105 bits (252), Expect = 7e-24
Identities = 55/110 (50%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -1
Query: 669 PGVEXXXXXXXXXXXLAPGGHLGRFVXWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 490
PGVE LAPGGHLGRFV WT+SAFG LD +FGS ++ KKN+ LP+ +
Sbjct: 225 PGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENII 284
Query: 489 ANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYA 346
+N D+TRL+ SDEI+ +++A RV RA +K NPL N + +LNPYA
Sbjct: 285 SNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYA 334
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 752 NRXCIQRKGPXIIFXQDXG 696
NR +QR+GP ++F +D G
Sbjct: 198 NRRHVQRRGPLVVFNEDTG 216
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = -1
Query: 528 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 349
KQK + + Q K LT+ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787
Query: 348 AAVXEEESYLRAA 310
+ +++ +++
Sbjct: 788 PQITVKQNTTKSS 800
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1
Query: 346 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 507
+V +EF+ RL IG+RV+ AF+GS E + L+ + +T + ++ L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 605 LDVSSXGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 471
+D+ S LS H+ T +S R H ST PSQ + + SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 372 AMLKLNPYAAVXEEESYLRAAQKEELE 292
A+LK + Y ++ EEES R ++EE++
Sbjct: 180 ALLKEDAYGSIEEEESKKRKFEEEEID 206
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Frame = -1
Query: 519 KNFNLPQPKMANTDLTRLLKSDEIRKVLRAP----------NKRVIRATRKLNPL-TNNK 373
KNF + M+ ++ +L DE+R + R +K +I +++ + L N +
Sbjct: 136 KNFFEDESLMSTEEIIEILSLDELRSLARQTKVCGKSRSEISKEIIFLSKRQSVLHCNGQ 195
Query: 372 AMLKLNPYAAVXEEESYLR 316
L + + + ++ES+LR
Sbjct: 196 QFLSFDAFGVMHKQESFLR 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,670
Number of Sequences: 5004
Number of extensions: 37884
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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