Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_J01
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          120   2e-27
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   117   1e-26
11_01_0205 + 1617044-1617197,1617845-1618233                           30   2.3  
02_04_0073 - 19471254-19472681                                         29   4.0  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     28   7.0  
08_02_0934 + 22747742-22748644                                         28   9.2  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  120 bits (288), Expect = 2e-27
 Identities = 57/122 (46%), Positives = 80/122 (65%)
 Frame = -1

Query: 669 PGVEXXXXXXXXXXXLAPGGHLGRFVXWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 490
           PGV+           LAPGGHLGRFV WT+SAF +L+ ++G+++ PS +KK F LP+PKM
Sbjct: 230 PGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKM 289

Query: 489 ANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVXEEESYLRAA 310
           AN DL R++ SDE++ V++  NK V R  ++ NPL N  A+LKLNPY     + + L  A
Sbjct: 290 ANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEA 349

Query: 309 QK 304
            +
Sbjct: 350 AR 351


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  117 bits (281), Expect = 1e-26
 Identities = 57/122 (46%), Positives = 77/122 (63%)
 Frame = -1

Query: 669 PGVEXXXXXXXXXXXLAPGGHLGRFVXWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 490
           PGV+           LAPGGHLGRFV WT+ AF +LD ++G + TP+ +KK F LP+PKM
Sbjct: 229 PGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKM 288

Query: 489 ANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVXEEESYLRAA 310
           AN DL+RL+ SDE++ V++  NK V     + NPL N  A+LKLNPY     + + L  A
Sbjct: 289 ANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEA 348

Query: 309 QK 304
            +
Sbjct: 349 AR 350


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 355 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 444
           ++  HRLV G+  +F    +H FV S ++L
Sbjct: 35  LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 581 SPHSAGLTPYSGHGRHHRNKR 519
           +P   G +P S HG HHR+++
Sbjct: 20  APRPRGASPLSSHGHHHRSRK 40


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 621 APG--GHLGRFVXWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 481
           APG  G  GR+V    SA   LDP F SW   S++ K F++ +   A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717


>08_02_0934 + 22747742-22748644
          Length = 300

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
 Frame = -2

Query: 578 PHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSV-LPTNA*SVLH 402
           P++A    Y GH  HHR    T+       P   S    S   SG  S+  P N   V  
Sbjct: 152 PYAAAFAAYPGHHHHHR-FAATAAAAMPPPPHYPSWAAGSRYYSGPGSISQPINGSPVAP 210

Query: 401 AN*TRSPITRRC 366
           A   R P    C
Sbjct: 211 AGMWRLPAAASC 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,657,136
Number of Sequences: 37544
Number of extensions: 289120
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)