Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_I24
(847 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.4
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 3.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.5
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 7.3
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 706 PXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPP 834
P P P PP P P SP P PP PP
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 281
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 706 PXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPP 834
P P P PPP P SP P PP PP
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 314
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +1
Query: 706 PXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPPXXXP 846
P P PPPR G P P P P PP PP P
Sbjct: 257 PPPAAGSPPPPRTG-SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 706 PXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPP 834
P P P PP P P SP P PP PP
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 302
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 706 PXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPP 834
P P P PPP P SP P PP PP
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 335
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +1
Query: 706 PXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPPXXXP 846
P P PPPR G P P P P PP PP P
Sbjct: 278 PPPAAGSPPPPRTG-SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 706 PXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPP 834
P P P PP P P SP P PP PP
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 287
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 706 PXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPP 834
P P P PPP P SP P PP PP
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 320
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +1
Query: 706 PXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPPXXXP 846
P P PPPR G P P P P PP PP P
Sbjct: 263 PPPAAGSPPPPRTG-SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +1
Query: 697 PXXPXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPPXXXP 846
P P P P PPP P P P P PP PP P
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPP--MCPPPPPPPPPPMCPP 76
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/84 (23%), Positives = 22/84 (26%), Gaps = 2/84 (2%)
Frame = +1
Query: 601 PPRPXXXXPXPXXXPXXXLXSXXPXXXAXXFXPXXPXPXPXXF--PPPRXGXXPXXXPXX 774
PP P P P + P + P P P P PP G P P
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSR 324
Query: 775 XSPXPXXLXXXXPPXXXXPPXXXP 846
P PP P P
Sbjct: 325 FGPPGMGGMPPPPPPGMRYPGGMP 348
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +1
Query: 706 PXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPPXXXP 846
P P P PP G P P P PP PP P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +1
Query: 706 PXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPPXXXP 846
P P P PP G P P P PP PP P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/84 (23%), Positives = 22/84 (26%), Gaps = 2/84 (2%)
Frame = +1
Query: 601 PPRPXXXXPXPXXXPXXXLXSXXPXXXAXXFXPXXPXPXPXXF--PPPRXGXXPXXXPXX 774
PP P P P + P + P P P P PP G P P
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSR 334
Query: 775 XSPXPXXLXXXXPPXXXXPPXXXP 846
P PP P P
Sbjct: 335 FGPPGMGGMPPPPPPGMRYPGGMP 358
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +1
Query: 706 PXPXPXXFPPPRXGXXPXXXPXXXSPXPXXLXXXXPPXXXXPPXXXP 846
P P P PP G P P P PP PP P
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/86 (24%), Positives = 23/86 (26%), Gaps = 5/86 (5%)
Frame = +1
Query: 604 PRPXXXXPXPXXXPXXXLXSXXPXXXAXXFXPXXPXPXPXXFPPPRXGXXPXXXP----- 768
P P P P P P P P P P PPP P P
Sbjct: 101 PYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPAPHSAYI 160
Query: 769 XXXSPXPXXLXXXXPPXXXXPPXXXP 846
+P P + PP P P
Sbjct: 161 DHSAPRPAYIEHSAPPPQPQYPQQQP 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,082,658
Number of Sequences: 27780
Number of extensions: 100566
Number of successful extensions: 337
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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