Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_I23
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    99   4e-21
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    99   4e-21
06_03_0543 + 21967787-21970261                                         29   5.9  
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638...    29   5.9  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 48/97 (49%), Positives = 61/97 (62%)
 Frame = -1

Query: 649 NQIQAAFX*TXXLDCIGPCTRPSTHY*ASYVNIPVIALCNTDSPXRFVDIAIPCNTKSSH 470
           NQ+Q +F     L    P T       ++  NIP IA C+TDSP R+VDI IP N K   
Sbjct: 114 NQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQ 173

Query: 469 SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 359
           SIG ++WLLAR VL++RG +    +WDV+VDLFFYRD
Sbjct: 174 SIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRD 210



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 669 HTRXF*XTRSKLHFXEPXXLIVLDPAQDHQPITELHMSTFL*L-LCATQTP 520
           HT      + +  F EP  LI+ DP  DHQPI E  +     +  C T +P
Sbjct: 107 HTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSP 157


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 48/97 (49%), Positives = 62/97 (63%)
 Frame = -1

Query: 649 NQIQAAFX*TXXLDCIGPCTRPSTHY*ASYVNIPVIALCNTDSPXRFVDIAIPCNTKSSH 470
           NQ+Q +F     L    P T       ++  NIP IA C+TDSP R+VDI IP N K  +
Sbjct: 114 NQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRN 173

Query: 469 SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRD 359
           SIG ++WLLAR VL++RG +    +WDV+VDLFFYRD
Sbjct: 174 SIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRD 210



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 669 HTRXF*XTRSKLHFXEPXXLIVLDPAQDHQPITELHMSTFL*L-LCATQTP 520
           HT      + +  F EP  LI+ DP  DHQPI E  +     +  C T +P
Sbjct: 107 HTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSP 157


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 460 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 371
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>05_03_0609 -
           16161801-16162848,16163525-16163682,16163806-16163835,
           16164242-16164323,16164599-16164672
          Length = 463

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 443 QQPPHQTNRVGRLGVAWDSNVHKSXWGVCVAQS 541
           + PP Q  RVG  GV      H   WG C  +S
Sbjct: 17  EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,627,611
Number of Sequences: 37544
Number of extensions: 295456
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)