Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_I18
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...   178   7e-46
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...   133   3e-32
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    46   7e-06
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    27   3.4  
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c...    27   4.5  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   5.9  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   5.9  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    26   7.8  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score =  178 bits (434), Expect = 7e-46
 Identities = 85/195 (43%), Positives = 125/195 (64%), Gaps = 1/195 (0%)
 Frame = -1

Query: 664 VVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTK 485
           V+++DCQFHQCV+L +FE EH I+FIPPDGE ELM YR+ ++I++PFR++P+V ++ + K
Sbjct: 254 VILEDCQFHQCVRLPEFENEHRITFIPPDGEVELMSYRSHENINIPFRIVPIVEQLSKQK 313

Query: 484 MEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAG 305
           +  ++ +++++ P  L   +  +IP P N         +GKA Y+ SEN I WKI R  G
Sbjct: 314 IIYRISIRADY-PHKLSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLG 372

Query: 304 MKETQLSAEIELLETDTKKKWTRPPISMGFEV-PFAPSGFKVRYLKVFEPKLNYSDHDVI 128
             E    AE+EL  T  ++ W +PPIS+ F +  F  SG  V+YL+V EP  + S +  I
Sbjct: 373 ETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQYLRVSEP--SNSKYKSI 430

Query: 127 KWVRYIGRSGLYETR 83
           KWVRY  R+G  E R
Sbjct: 431 KWVRYSTRAGTCEIR 445



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 804 MKSXFPGCQECKFGINDK 751
           M++   G  EC+FG+NDK
Sbjct: 209 MRAMLSGMPECQFGLNDK 226


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score =  133 bits (322), Expect = 3e-32
 Identities = 71/201 (35%), Positives = 115/201 (57%), Gaps = 4/201 (1%)
 Frame = -1

Query: 688 GXALGXPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPL 509
           G  +    V ++D +FHQCV+L++FE + +ISFIPPDGEF+LM YR + ++  P   +  
Sbjct: 223 GRTIKGNTVEMEDVKFHQCVRLARFENDRTISFIPPDGEFDLMSYRMSSNVR-PLIWVEC 281

Query: 508 VREV-GRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAI 332
              V   +++E  V  K+ FK   +   +++ IP P +    +     G  +Y   + A+
Sbjct: 282 ESIVHSGSRIEFMVKAKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAM 341

Query: 331 VWKIKRMAGMKETQLSAEIEL--LETDTKKKWTRPPISMGFEVP-FAPSGFKVRYLKVFE 161
           VW IK+ AG KE  + AE+ L  ++ +  +   + P+ + F +P F  SG +VRYLK+ E
Sbjct: 342 VWNIKKFAGGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRYLKITE 401

Query: 160 PKLNYSDHDVIKWVRYIGRSG 98
           PKLNY     + WVRY+ ++G
Sbjct: 402 PKLNY---HAMPWVRYVTQNG 419


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
 Frame = -1

Query: 670 PVVVIDDCQFHQCVKLSKFETE-HSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVG 494
           P   + + +FHQ V L +++     I FIPPDG+F L  ++T  D +   + +P+V E  
Sbjct: 223 PGTKLGNVRFHQSVNLKRWKQHPDQIEFIPPDGKFTLASFQT--DFATQ-KSLPVVVE-A 278

Query: 493 RTKME--VKVVLKSNFKPSLLGQKIEVKIPTPLNTSGV-QLICLKGKAKYKASENAIV-W 326
           + K++   +V +++  K S+   KI + IP  L +  V +   +   +KY   E  I+ W
Sbjct: 279 KNKLDGRFEVRIRNTGKKSVENLKILITIPQALKSVTVTEGNYIFRASKYTHMEEGILEW 338

Query: 325 KIKRMA 308
            +K++A
Sbjct: 339 SVKKLA 344


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 319 KRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVPFAPSGFKVRY 176
           K++   + TQ+   +ELL T T+++W   P    +   +  S F+VRY
Sbjct: 229 KKVVPFQSTQMLRIMELLGTPTEERW---PGLKNYPEYYQLSSFEVRY 273


>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 448 PSLLGQKIEVKIPTPLNTSGVQLICLK 368
           PS+L   IE  + T    +G+Q+IC+K
Sbjct: 242 PSILSSSIETFLRTLKRETGLQVICIK 268


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 390 PLVFSGVGIFTSIFCPSREGLKLLF 464
           P+V SG G+   ++CP++ G  L+F
Sbjct: 162 PVVSSG-GVMADLWCPAQRGTALIF 185


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 211 VPFAPSGFKVRYLKVFEPKLNYSDHDVIKW 122
           VP+  + +   YLK+F  K N S  D+ +W
Sbjct: 206 VPYFSTAWFQFYLKLFSQKDNVSSSDLTRW 235


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 625 LSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRV 518
           L KF+TE  +     D    L  Y  +KDIS  FRV
Sbjct: 409 LFKFDTEDEVVAWANDSPVGLAGYLFSKDISRVFRV 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,107
Number of Sequences: 5004
Number of extensions: 65760
Number of successful extensions: 205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)