Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_I16
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.52 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 591  PSXPNXXSPPRLXSPXPXRXPXS--PPPXXXPXP 686
            P  P   +PP++ +P P   P S  PPP   P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/53 (28%), Positives = 16/53 (30%)
 Frame = +3

Query: 534  PSXAXSXXTXSPXXTQXRXPSXPNXXSPPRLXSPXPXRXPXSPPPXXXPXPPL 692
            P+   S     P        S P    PP    P P   P    P   P PPL
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
 Frame = +1

Query: 502  SXXPPPPXXXXPPXPXLXKXPPP--XXXNXGXPXXPTXXLPRGXPP 633
            S  PP      PP P +   PPP       G P  P   LP    P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 24/92 (26%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
 Frame = +3

Query: 417 PRPHXXXPVXSXXPGXXPXFAVXXSNXXLXXPPPXLEXXPSXAXSXXTXSPXXTQXRXPS 596
           P P    P  S  P   P      ++      PP L   PS   S    +P       P+
Sbjct: 389 PAPPPAIPGRSA-PALPPLGNASRTSTPPVPTPPSLP--PSAPPSLPPSAPPSLPMGAPA 445

Query: 597 XPNXXSPPRLXSPXPXRXPXSPP-PXXXPXPP 689
            P       +  P P   P +PP P   P PP
Sbjct: 446 APPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = +1

Query: 502 SXXPPPPXXXXP-PXPXLXKXPPPXXXNXGXPXXP 603
           S  PPPP    P P P     PPP     G P  P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,552
Number of Sequences: 5004
Number of extensions: 14932
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)