Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_I13
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 123 3e-29
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 123 3e-29
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 28 1.7
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 27 2.9
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 3.8
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 5.1
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.7
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 123 bits (296), Expect = 3e-29
Identities = 56/106 (52%), Positives = 72/106 (67%)
Frame = -3
Query: 726 TIEXKVKWAREHXENLSLSILCLPKMK*LTAXVSPKGKGYKGVTSRWHTKKLPRKTHKGL 547
++ KV+WAREH E + + + +GKG +G T+RW TK+LPRKTH+GL
Sbjct: 187 SVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGL 246
Query: 546 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 409
RKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 247 RKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 91.9 bits (218), Expect = 9e-20
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -2
Query: 286 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 107
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 106 D 104
D
Sbjct: 386 D 386
Score = 51.2 bits (117), Expect = 2e-07
Identities = 23/38 (60%), Positives = 26/38 (68%)
Frame = -1
Query: 386 NASTEYDLSEKSITPMGGSPHYGEVNNDFVMXQGLLHG 273
NAST++D +EK ITPMGG YG V NDFVM G G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 123 bits (296), Expect = 3e-29
Identities = 56/106 (52%), Positives = 72/106 (67%)
Frame = -3
Query: 726 TIEXKVKWAREHXENLSLSILCLPKMK*LTAXVSPKGKGYKGVTSRWHTKKLPRKTHKGL 547
++ KV+WAREH E + + + +GKG +G T+RW TK+LPRKTH+GL
Sbjct: 187 SVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGL 246
Query: 546 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 409
RKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 247 RKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 91.9 bits (218), Expect = 9e-20
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -2
Query: 286 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 107
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 106 D 104
D
Sbjct: 386 D 386
Score = 51.2 bits (117), Expect = 2e-07
Identities = 23/38 (60%), Positives = 26/38 (68%)
Frame = -1
Query: 386 NASTEYDLSEKSITPMGGSPHYGEVNNDFVMXQGLLHG 273
NAST++D +EK ITPMGG YG V NDFVM G G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 729 CT--IEXKVKWAREHXENLSLSILCLP 655
CT IE + WA+E+ + S+LCLP
Sbjct: 332 CTDAIEQTITWAKEYIKKAKDSLLCLP 358
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 490 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 344
S + L S Y + L W++E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 125 HGYTQEGSYSRRSCGYHNPS 66
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 627 SPKGKGYKGVTSRWHTKKLPRKTHK 553
+PK K + G T WH+ PR T K
Sbjct: 412 TPKSK-HAGSTQEWHSHTTPRSTSK 435
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 373 SVDALFLITLPSFLWIPW 426
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,435
Number of Sequences: 5004
Number of extensions: 66582
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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