Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_I12
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      34   0.028
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    30   0.35 
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.5  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.3  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   5.7  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   9.9  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   9.9  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 33.9 bits (74), Expect = 0.028
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = -2

Query: 629 PVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYM--WNVEARN 456
           P+F T +GK+ V IC+         +   NGA+++      +A    + Y   W++  + 
Sbjct: 136 PIFETSFGKLGVMICWDTAFPEVARIHALNGADLL-----VVATNWENPYSDDWDLVTKA 190

Query: 455 AAITNCYFTAAINRVG 408
            A  NC    A NRVG
Sbjct: 191 RAFENCIPLVAANRVG 206



 Score = 30.3 bits (65), Expect = 0.35
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 340 FYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRL-DMYVNSLS 167
           F+G S   GP G     L   ++G++   VDL+  + +R     +   R+ D+Y   LS
Sbjct: 213 FFGHSKIIGPTGKVIKALDEEKEGVISYTVDLDDAKPLRKNYYTFFEDRMPDLYKRLLS 271


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -3

Query: 523 LIRQRRSPEKAAASTCGTLKLGTQLSRTATSQRPSTESANEEFPNEFTSADGKPAHKDLG 344
           +++   S    + S+ G+    T  S ++ S   S  S +      +TSA G  AH   G
Sbjct: 417 IVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAHSS-G 475

Query: 343 LFYGSS 326
              GSS
Sbjct: 476 SSSGSS 481


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 442 FVIAAFLASTFHMYSLPPSPAIVAD 516
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 448 SRTATSQRPSTESANEEFPNEFTSADGKPAHKD 350
           S+T  S   S  SA  +FP EF +A    AH +
Sbjct: 256 SQTRRSSWSSIASAFNDFPEEFPNASNPEAHSN 288


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 502 PEKAAASTCGTLKLGTQLSRTATSQRPSTESANEEFPNEF 383
           P +  A T  T KL     + A+ +RP       E P +F
Sbjct: 434 PNRLTAETVDTNKLTASKEQIASPKRPGPSDNGNEIPTKF 473


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 436 TSQRPSTESANEEFPNEFTSADGKPAHKDLGLFYGS 329
           +S R  +  A  +F + F+  + KP+ KDL LF+G+
Sbjct: 145 SSSRLLSTDAFSQFISSFSPPE-KPSMKDLALFHGN 179


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 499 EKAAASTCGTLKLGTQLSRTATSQRPSTESANEE 398
           E AA +  GTL  G+Q   T  +Q   + S N E
Sbjct: 898 EPAAGTVTGTLTSGSQFFTTTIAQASGSVSGNVE 931


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,554
Number of Sequences: 5004
Number of extensions: 53009
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)