Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_I10
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949...    31   1.5  
03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759           30   2.6  
01_06_0581 - 30386018-30386440                                         29   4.6  

>04_04_1237 -
           31991817-31992569,31993452-31993550,31994343-31994976,
           31995329-31995585
          Length = 580

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +3

Query: 264 HSGSGVRSQVLERLEMRL--RSGGGGARRQRCTRHTSAAAXKXAXAHXXXAXCTRXTRGA 437
           H G    + V+  +  RL  R GGGG RR+R  R  SAAA              R  +  
Sbjct: 380 HQGVAAAAAVVRAVGRRLVVRRGGGGRRRRR-RRRPSAAAAAAGEQEGKVRQGPRGVQEQ 438

Query: 438 LPASPSR 458
           +P  P R
Sbjct: 439 VPCPPPR 445


>03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759
          Length = 417

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 282 RSQVLERLEMRLRSGGGG--ARRQRCTRHTSAAAXKXA 389
           R+  LER   R +SGGGG  A+ QR +   +AAA + A
Sbjct: 323 RTDALERQPSRRKSGGGGGGAKMQRSSSSHAAAAQRGA 360


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 273 SGVRSQVLERLEMRLRSGGGGARRQ 347
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,704,126
Number of Sequences: 37544
Number of extensions: 190529
Number of successful extensions: 854
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)