Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_I06
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    30   0.50 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.7  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 754 PXPXXPLPXPPXPPPXTXP 810
           P    PLP PP PPP T P
Sbjct: 229 PKQADPLPAPPPPPPPTLP 247



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 755 PXPXXPFPPPPXXPP 799
           P P  P PPPP  PP
Sbjct: 234 PLPAPPPPPPPTLPP 248


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/68 (23%), Positives = 19/68 (27%)
 Frame = +1

Query: 616  PSXXXXPXXPXPXXXXPXXPXXXXXSXXXXXXSPPXXXXGXXXRXXPXPXXPLPXPPXPP 795
            P+    P  P P    P  P            +             P P   +  PP PP
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212

Query: 796  PXTXPXXP 819
            P T P  P
Sbjct: 1213 PSTAPPVP 1220


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/65 (24%), Positives = 17/65 (26%)
 Frame = +1

Query: 634 PXXPXPXXXXPXXPXXXXXSXXXXXXSPPXXXXGXXXRXXPXPXXPLPXPPXPPPXTXPX 813
           P  P P       P     S       PP           P P      PP PPP + P 
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371

Query: 814 XPXXP 828
               P
Sbjct: 372 TGRQP 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,135,273
Number of Sequences: 5004
Number of extensions: 12130
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)