Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_H22
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 198 3e-51
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 30 2.0
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 4.6
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 29 6.1
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 29 6.1
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 29 6.1
08_02_0478 + 17621678-17623768 28 8.0
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 28 8.0
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 198 bits (484), Expect = 3e-51
Identities = 106/192 (55%), Positives = 122/192 (63%), Gaps = 1/192 (0%)
Frame = -3
Query: 715 GGXXRXXPIRXXIXIMAXXTXGXXGEKRTQNPXAHFRSTEAIQHSRAXCRIVC*KGXXXX 536
G R P+R I I A T GEK + + + K
Sbjct: 38 GVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPENGVELYAEKVNNRG 97
Query: 535 LCAIAQAESXRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 356
LCAIAQAES RYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR QRAKSMKF DG
Sbjct: 98 LCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDG 157
Query: 355 LMIHSGDPCNDYVNTATRHVLFRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHXLVTEPKD 176
MI SG P N Y+++A RHVL RQGVLGIKVKIML WD +GK GP P PD + PKD
Sbjct: 158 YMISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPKD 217
Query: 175 EPVPLEP-TSEV 143
E +P T+E+
Sbjct: 218 EDEFSKPLTAEI 229
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = +2
Query: 278 YSLSEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 457
+ L++ + GS +++ V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 458 TIASTTYSETSDKLVS 505
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +1
Query: 367 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 471
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 286 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHXLVTEPKDEPVPLEPTSEV 143
Q VL I+ K ++ + P P P +EP+ EP P++ S V
Sbjct: 283 QAVLAIEYKRKPEDEESSSSAPLPPPPVSTSESEPEPEPEPVKEVSPV 330
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = -3
Query: 328 NDYVNTATRHVLFR----QGVLGIKVKIMLPWDQQGKNGPKKPQPDHXLVTEPK 179
++ +N H+ R QGVL +++ + +Q +NGP+K + L+TE K
Sbjct: 359 SERINGIVNHLRIRGNPVQGVLQLEILRQIALPKQSQNGPRKSRLTISLMTEHK 412
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/75 (20%), Positives = 35/75 (46%)
Frame = -3
Query: 481 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 302
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 301 HVLFRQGVLGIKVKI 257
+L + + +++
Sbjct: 532 EILGEEVARNVTLRV 546
>08_02_0478 + 17621678-17623768
Length = 696
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 370 KFVDGLMIHSGDPCNDYVNTATRHVLFRQGVL 275
K + GL+IHSG ND+V+++ + + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 186 SVTXMWSGCGFFGPFLPCWSH 248
S T M S CGF G CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,800,342
Number of Sequences: 37544
Number of extensions: 306502
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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