Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_H19
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.0
04_02_0026 + 8708765-8710935,8711021-8711272,8711353-8711463,871... 29 4.0
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.3
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.3
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 28 9.3
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 28 9.3
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.3
02_01_0158 - 1103461-1104186 28 9.3
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 80 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>04_02_0026 +
8708765-8710935,8711021-8711272,8711353-8711463,
8711553-8711634,8711909-8712100
Length = 935
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = -1
Query: 660 PDSXHQP-PPXLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYF 484
P HQP PP L S P P +P +PPL + P S +PP
Sbjct: 490 PSPRHQPSPPPLRSPPRQPTPPP----SPSQQPPLPAPQPVQASPTSPAKQHAPPAPPSV 545
Query: 483 QVNDESQASRLISR 442
Q + + S L+ +
Sbjct: 546 QTSPPTPQSALVEQ 559
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 72 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 218
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 239 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 60
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 59 ILHSF 45
+LHSF
Sbjct: 1408 LLHSF 1412
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = -1
Query: 666 KSPDSXHQPPPXLTSISINP------LTPX*KEFAPGLKPPLSSEAPSAYLTPSS 520
K+P S QP + S++ P +TP + P +PP++S P+A TP++
Sbjct: 89 KAPVSQSQPATPVASVARTPPPQAPVVTP--EPAPPSAQPPVASATPAAAATPAA 141
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -1
Query: 642 PPPXLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYF 484
PPP SIS P P AP P + + PS+ PS + P+F
Sbjct: 99 PPPPPASISPTPAPPLPPPPAPAPPPTPTPKFPSSSANPSPPDAYPFTNYPFF 151
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 440 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 351
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
>02_01_0158 - 1103461-1104186
Length = 241
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 545 GASDDNGGFNPGANSFXYGVRGLMEMDVXSGGG 643
G +GG PG F G G M D +GGG
Sbjct: 112 GGGRRSGGGGPGGGCFKCGESGHMARDCFNGGG 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,580,868
Number of Sequences: 37544
Number of extensions: 394502
Number of successful extensions: 1169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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