Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_H16
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    73   7e-14
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    72   1e-13
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    29   1.1  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.9  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 72.5 bits (170), Expect = 7e-14
 Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
 Frame = -3

Query: 761 IQXKGPX*XXTX-SGFNWAXXNXPXVEXLNVNKXTS*SWXREVIFDVXSXXXQSAFGRXD 585
           +Q +GP       +G   A  N P VE +NV +                   +SAFG  D
Sbjct: 202 VQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLD 261

Query: 584 PLFGSWETPSKXKKNFNLPQPKMANTDLTRLXKSDEIRKVLRAPN-KRVIRA-TRKLNPL 411
            +FGS    ++ KKN+ LP+  ++N D+TRL  SDEI+ +++A    RV RA  +K NPL
Sbjct: 262 SVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPL 321

Query: 410 TNNKAMLKLNPY 375
            N   + +LNPY
Sbjct: 322 KNKAVLARLNPY 333


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
 Frame = -3

Query: 761 IQXKGPX*XXTX-SGFNWAXXNXPXVEXLNVNKXTS*SWXREVIFDVXSXXXQSAFGRXD 585
           +Q +GP       +G   A  N P VE +NV +                   +SAFG  D
Sbjct: 202 VQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLD 261

Query: 584 PLFGSWETPSKXKKNFNLPQPKMANTDLTRLXKSDEIRKVLRAPN-KRVIRA-TRKLNPL 411
            +FGS    ++ KKN+ LP+  ++N D+TRL  SDEI+ +++A    RV RA  +K NPL
Sbjct: 262 SVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPL 321

Query: 410 TNNKAMLKLNPY 375
            N   + +LNPY
Sbjct: 322 KNKAVLSRLNPY 333


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +3

Query: 372 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLXKTCEVSVGHLWLGQ 533
           +V +EF+ RL IG+RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 554 KXKKNFNLPQPKMANTDLTRLXKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 378
           K K + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,164
Number of Sequences: 5004
Number of extensions: 27061
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)