Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_H16
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           85   5e-17
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    82   5e-16
11_01_0205 + 1617044-1617197,1617845-1618233                           30   2.6  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 39/78 (50%), Positives = 55/78 (70%)
 Frame = -3

Query: 608 QSAFGRXDPLFGSWETPSKXKKNFNLPQPKMANTDLTRLXKSDEIRKVLRAPNKRVIRAT 429
           +SAF + + ++G++E PS  KK F LP+PKMAN DL R+  SDE++ V++  NK V R  
Sbjct: 259 ESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRRE 318

Query: 428 RKLNPLTNNKAMLKLNPY 375
           ++ NPL N  A+LKLNPY
Sbjct: 319 KRKNPLKNVAAVLKLNPY 336


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 38/78 (48%), Positives = 53/78 (67%)
 Frame = -3

Query: 608 QSAFGRXDPLFGSWETPSKXKKNFNLPQPKMANTDLTRLXKSDEIRKVLRAPNKRVIRAT 429
           + AF + D ++G ++TP+  KK F LP+PKMAN DL+RL  SDE++ V++  NK V    
Sbjct: 258 ECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLRE 317

Query: 428 RKLNPLTNNKAMLKLNPY 375
            + NPL N  A+LKLNPY
Sbjct: 318 ARRNPLKNVAAVLKLNPY 335


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 381 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 470
           ++  HRLV G+  +F    +H FV S ++L
Sbjct: 35  LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,515
Number of Sequences: 37544
Number of extensions: 217356
Number of successful extensions: 339
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)