Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_H15
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.8  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   3.2  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   7.4  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   7.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +3

Query: 588 PXPPVPRPXXXXTXPXPIXTRXLPLXPXPXXRPXXG 695
           P PP PR     + P P   R  P  P P   P  G
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = +2

Query: 548 PSTIRTXPANTXLAXTPCXPAPXXGNPPLXHXHPXPPPXXXPXXPP 685
           P+ I   PA   +   P  PAP  G PP     P PPP      PP
Sbjct: 737 PAVIVPTPAPAPIPVPP--PAPIMGGPP----PPPPPPGVAGAGPP 776


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -3

Query: 332 PPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 240
           PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 101 PPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
 Frame = +2

Query: 593 TPCXPAPXXGNPPLXHXHPXPPP---XXXPXXPPXXWTXSXXS 712
           TP  P P    P + H HP PPP      P  PP   T +  S
Sbjct: 728 TPAPPTPAP-TPAVKH-HPPPPPVRSSISPSMPPAPLTHANSS 768


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 329 PPPLRSLISNLSNTCDLTPLPEW 261
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
 Frame = +2

Query: 548  PSTIRTXPANTXLAXTPCXPAPXXGNPPLXH----XHPXPPPXXXPXXP 682
            P+     P        P  PAP  G PP+        P PPP   P  P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,480,709
Number of Sequences: 5004
Number of extensions: 17859
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)