Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_H14
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 137 2e-33
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 134 1e-32
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 105 9e-24
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 54 3e-08
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 46 5e-06
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 29 0.76
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 29 0.76
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 3.0
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 5.3
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 5.3
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 7.0
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 7.0
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 9.3
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 9.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.3
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 137 bits (331), Expect = 2e-33
Identities = 75/163 (46%), Positives = 95/163 (58%)
Frame = -3
Query: 739 KDNNLLGKFELXRDPTRRRVACLKLRXXXXXXXXXXXXXPLSRSPPXKENKITITNDKGR 560
KD NLLGKFEL P R ++ K KITITNDKGR
Sbjct: 449 KDCNLLGKFELSGIPPAPR-GVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGR 507
Query: 559 LSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMXXXXXXXXXXXXXKQT 380
LSKEEI+RMV+EAEKY+ ED+ + IQAKN LESY +S+++++ K+
Sbjct: 508 LSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEA 567
Query: 379 ILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMYQ 251
I +TI+WLD N A K+EYE KQKELEG+ NPI+ K+YQ
Sbjct: 568 IDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 134 bits (325), Expect = 1e-32
Identities = 74/163 (45%), Positives = 95/163 (58%)
Frame = -3
Query: 739 KDNNLLGKFELXRDPTRRRVACLKLRXXXXXXXXXXXXXPLSRSPPXKENKITITNDKGR 560
KD NLLGKFEL P R ++ K KITITNDKGR
Sbjct: 449 KDCNLLGKFELSGIPPAPR-GVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGR 507
Query: 559 LSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMXXXXXXXXXXXXXKQT 380
LSKEEI+RMV EAEKY+ ED+ + IQAKN LESY +S+++++ K+T
Sbjct: 508 LSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKET 567
Query: 379 ILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMYQ 251
+ +TI+WLDSN A K+E+E KQKELE + NPI+ K+YQ
Sbjct: 568 VDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 105 bits (251), Expect = 9e-24
Identities = 62/165 (37%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Frame = -3
Query: 739 KDNNLLGKFELXR-DPTRRRVACLKLRXXXXXXXXXXXXXPLSRSPPXKENKITITNDKG 563
KDNNLLGKF+L P R V +++ + +S K K+ I NDKG
Sbjct: 478 KDNNLLGKFDLRGIPPAPRGVPQIEVTFEVDANGVLTVSA-VDKSGKGKPEKLVIKNDKG 536
Query: 562 RLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTM-XXXXXXXXXXXXXK 386
RLS+E+IERMV EAE++ ED KE I+A+N LE+Y +S+K K
Sbjct: 537 RLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDK 596
Query: 385 QTILDKCNDTIKWLD-SNQLADKEEYEHKQKELEGICNPIITKMY 254
Q +LD D +WL+ + A KEE+E ++++L+ + +PI K+Y
Sbjct: 597 QAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 53.6 bits (123), Expect = 3e-08
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = -2
Query: 770 QVFGGERAMTXR*QLAR*IRAXPGSHPAPRGVPQIEVTFDIDANGILNVSAIEKST 603
+VF GER + +L + G PAP+G PQIEV+FD+DA+GI+NVSA +K+T
Sbjct: 482 RVFQGERELVRDNKLIGNFQLT-GIAPAPKGQPQIEVSFDVDADGIINVSARDKAT 536
Score = 47.2 bits (107), Expect = 3e-06
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = -3
Query: 598 KENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTM 428
K++ IT+ G L+ EIE MV +AEKYR D +KE I+ N ES C ++S +
Sbjct: 538 KDSSITVAGSSG-LTDSEIEAMVADAEKYRASDMARKEAIENGNRAESVCTDIESNL 593
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 46.4 bits (105), Expect = 5e-06
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = -2
Query: 701 GSHPAPRGVPQIEVTFDIDANGILNVSAIEKST 603
G P PRG ++E TF++DANGIL V+A+EK+T
Sbjct: 466 GIPPMPRGQAELEATFELDANGILKVTAVEKTT 498
Score = 45.2 bits (102), Expect = 1e-05
Identities = 19/53 (35%), Positives = 35/53 (66%)
Frame = -3
Query: 586 ITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTM 428
I ITN G LS +I+ M+ A+K++ +D + ++AK+ LESY ++++T+
Sbjct: 504 IEITNSVGHLSSTKIQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIETTI 556
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.1 bits (62), Expect = 0.76
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 568 KGRLSKEEIERMVNEAEKYRNEDD 497
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.1 bits (62), Expect = 0.76
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 586 ITITNDKGRLSKEEIERMVNEAEKYRNEDDKQ-KETIQAKNALESYCFSMKSTM 428
++++ + RL E +E+ EAE DK ET+ KNALE Y + ++ +
Sbjct: 542 LSVSVQEDRLPTEVLEKY-REAEHQMIATDKLVAETVDRKNALEEYIYDTRAKL 594
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 535 MVNEAEKYRNEDDKQKETIQAKNALESYCFSMKST 431
M+++ RN+ +KQ TI KNA++ Y S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 243 EESPEVCRASRAEHPEPE 190
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 556 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 434
S+ E +++ E ++ ED+KQ E + K AL+ +C +++
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRN 339
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 598 KENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCF 446
K+ K T D SKEE+E +V E E D +Q + K+ L++ F
Sbjct: 530 KKGKHTQIEDPTAASKEELENLVREDE----NDSEQLDHFDMKSILKAEKF 576
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 568 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALE 458
+G L E E NEA++ NE+ E +N E
Sbjct: 89 EGELKLENFENQENEADEAENEETSYSEQNHTENTEE 125
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = -3
Query: 550 EEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMXXXXXXXXXXXXXKQTILD 371
EE++ +NEA+K NE ++ I+ +L+ +++ + KQT+++
Sbjct: 19 EELDAKINEAKKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSKQTLIN 78
Query: 370 K 368
K
Sbjct: 79 K 79
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 232 RGLLRHPGTSSLLSDCKCLPILSA-CAH 312
R ++ H GT + D CLP SA C H
Sbjct: 122 REVVHHEGTCEICYDEGCLPFFSAECDH 149
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 568 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALES 455
+GR + + N+ E + DDKQ + KN+LE+
Sbjct: 1259 RGRQKTSIVAKYRNKRELPEDSDDKQDTASKDKNSLET 1296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,478
Number of Sequences: 5004
Number of extensions: 46863
Number of successful extensions: 198
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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