Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_H13
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 31 0.18
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 28 1.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.2
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu... 27 2.9
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 27 2.9
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 27 2.9
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.9
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.1
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 26 6.8
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 26 6.8
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.8
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 26 6.8
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 25 9.0
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 9.0
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 31.1 bits (67), Expect = 0.18
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = +1
Query: 511 CPHHPL---RLHCLRTEVHDLLLTTSSSVH--RHARFFIKPRSSLCPTEAGRPSESSSRR 675
C HP+ R HCL E +DL + S VH H+ + S P +P +
Sbjct: 215 CLAHPIVGPRFHCLVCEDYDLCSSCVSHVHHDHHSMLRLTREISASPLHLSKPEKPKVLN 274
Query: 676 VDFGLXQ 696
DF L +
Sbjct: 275 FDFKLVE 281
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 385 PRLVRGAPEPQRTTTPQDL-SAEHRAPPHPAIDGP 486
PR + G P PQ+ + + S+ + PP P+ GP
Sbjct: 101 PRKLPGVPAPQKQSEASSVNSSTEKLPPPPSYPGP 135
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = +1
Query: 307 GPPSPAPTPMLRWAGSATGDFFPLSSPRLVRGAPEPQRTTTPQDLSAEHRAPPHPA 474
GPPS APT L AG G +P + P + T LS+ APP A
Sbjct: 1894 GPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETA-VPLSSMPNAPPSVA 1948
>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 228
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 126 RLLPLSSTGGAESDITRSDPRRQGIRKE*DSPSIP 22
RLLP+SST + + P+ IR DSP +P
Sbjct: 17 RLLPVSSTASSLKGSMMTIPKFTSIRTYTDSPEMP 51
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.1 bits (57), Expect = 2.9
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 7/138 (5%)
Frame = +1
Query: 277 RPRYRHVRAIGPPSPAPTPMLRWAGSATGDFFPLSSP---RLVRGAPEPQRTTTPQDLSA 447
R Y+ + +P LR S T + P+++ R RGA +TP+ + +
Sbjct: 86 RQNYQLAAKLSKKAPVDLHPLRPVRSQTPAYTPMTTRMMYRQTRGAQSEVNLSTPKQIYS 145
Query: 448 EHRAPPHPAIDGPCRSRVG----AFCPHHPLRLHCLRTEVHDLLLTTSSSVHRHARFFIK 615
+H +PP + S G P P R L+ E +S+S A
Sbjct: 146 KH-SPPSTSTSSIVSSSYGDAPSYLAPSKPNRSPPLKPEDPFASFNSSASAIAAASKSAA 204
Query: 616 PRSSLCPTEAGRPSESSS 669
+S ++ GR + +S
Sbjct: 205 ASASALSSDTGRSATMNS 222
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 540 AVKAERVVRAESPHPAPAGAVDCWVRGRP 454
A AER+ RA H + G V C +R P
Sbjct: 215 AKMAERITRARDNHDSIGGTVTCVIRNVP 243
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 3.9
Identities = 21/72 (29%), Positives = 26/72 (36%)
Frame = +1
Query: 310 PPSPAPTPMLRWAGSATGDFFPLSSPRLVRGAPEPQRTTTPQDLSAEHRAPPHPAIDGPC 489
PP P LR GS+TG S+PR A Q + P + P P +
Sbjct: 60 PPPPKHASQLRAGGSSTG-----STPRTASPAVGNQDYSKPSYSQPSYSQPSQPPKEPAL 114
Query: 490 RSRVGAFCPHHP 525
SR P P
Sbjct: 115 PSRGTPSLPSRP 126
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 310 PPSPAPTPMLRWAGSATGDFFPLSSPRLVRGAPEPQRTTTP 432
PP PAP R A + + +SSP V P QR T P
Sbjct: 222 PPPPAPPKPRRLAARTSSNSSGVSSPTSV--PPPVQRNTRP 260
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 574 TSSSVHRHARFFIKPRSSLCPTEAGRP 654
T+ ++ ++F+ +P+SS P +GRP
Sbjct: 105 TAKPPYQTSQFYARPQSSYAPPPSGRP 131
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +2
Query: 350 DLPPGTSSPSHLHDS*GAHQSHSAPPPHRTLVPSTGRPRTQQSTAPAGAGWGLSARTTRS 529
++PP +PS + D+ SH+ P L P + T S + +G S
Sbjct: 179 NIPPPLCTPSVVSDTFSEFASHAEYPGFSGLTPFSIHSPTASSVRSCQSIYGSPLSPPNS 238
Query: 530 AFTA 541
AF A
Sbjct: 239 AFQA 242
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 361 GDFFPLSSPRLVRGAPEPQRTTTPQDLSAEHRAP 462
G P + P++ + A E +TT PQDLS AP
Sbjct: 71 GSTRPSAKPQVEKTAVEV-KTTEPQDLSTAETAP 103
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 164 ETTPLXKARWAKFSSRQTRPA*RLPTKPQRAPPLRLSGDP 283
+ TP+ KARW + +++ + + P +P LR S P
Sbjct: 459 QLTPIPKARWNQLANKHPSLSNSAASPPVSSPGLRRSHIP 498
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 535 HCLRTEVHDLLLTTSSSVHRHARFFIKPRS 624
H L + + +L ++ HARFFIK +S
Sbjct: 674 HSLSPKYNPKILVCTTQKRHHARFFIKNKS 703
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 368 SSPSHLHDS*GAHQSHSAPPPHRTLVPSTGRPRTQQSTAPA 490
SSP + GA + P P R+ + GR RT +T A
Sbjct: 131 SSPYGGYSPSGASSARQTPAPSRSGASTAGRRRTSATTRGA 171
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 269 LSGDPGTAMCAP*ARLRRLPPQCYVGRDLPPGTSSPS 379
L GD G ++ AP + +PP L GTS S
Sbjct: 479 LDGDTGVSIYAPGGAITSVPPYSLQNSQLMNGTSMSS 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,609
Number of Sequences: 5004
Number of extensions: 56697
Number of successful extensions: 181
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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