Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_H12
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   3.1  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    27   4.1  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    26   5.5  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   7.2  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   7.2  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   7.2  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    26   7.2  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   9.6  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   9.6  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   9.6  

>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -3

Query: 250 STVTISVRSTNLTIDSISLPDDRRNASWTSFGDSCARRASDDAPVMFRMKFTLVL 86
           +T+  + +S+   +D  +L  D    SW  F DSC    +  +P   +++ T ++
Sbjct: 233 TTINSAAKSSFTWLDGNALLQDTNGLSWQQFIDSCLLCGTAISPTFPQIEGTFLI 287


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 633 LKCTLCQERLEDTHFVQCPSQPHHKFCFPCSRDSIKRQP 517
           L+C +C E         C     H FC  C RD ++  P
Sbjct: 27  LRCLICHEYFRAPLITSCS----HTFCSFCIRDYLREHP 61


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 41  LMARVLHSYDV*KNYQNQRELHSEHYGSVVGRPPRT 148
           L+A+ L SY + K ++N+R++  E YG+ +  P  T
Sbjct: 50  LLAQALDSYKLLK-FRNKRDVSLEKYGNTILLPAST 84


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 578 PANRTISSVSPAPGTRSRDSQGSEVYCPSGEKCPLANSTVP 456
           P  RT++  +  P  R +  QG+E +   G++    N+  P
Sbjct: 61  PRERTVNKKADQPRRRRQAPQGNEAFAREGKEARANNAAHP 101


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 636 LLKCTLCQERLEDTHFVQCPSQPH--HKFCFP 547
           +++C LC E L++   +QC    +  HK C+P
Sbjct: 416 IMRCALCGEFLKNAAGMQCIDCHYTCHKKCYP 447


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 118 RERRRTPAAHKNHQTKSTMHF 180
           R R+R P  HKNHQ    M F
Sbjct: 126 RRRKRHPNLHKNHQRLLGMSF 146


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 112 TLRERRRTPAAHKNHQTKSTMHFADRREVKSN 207
           +L  R+  PA  K H+  S     D+ EVK N
Sbjct: 788 SLSRRKSMPAEIKRHKESSETKPVDKEEVKKN 819


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 60  TPMTYRKTTKTNVNFIRNITGASSDARRAQESPNEVHDAFRRSSGSEIESI 212
           TP+ +  T     NF  N+T A+  +    ES +EV D F ++ G+ + +I
Sbjct: 253 TPLIHHLTNAVAKNFSANVTLAAYGSPTMGESYDEVAD-FAKAPGALVLNI 302


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 650 PHPHRYSNAPCARNAWKIRISCSAPANRTISSVSPAPGTRSRDSQGSEV 504
           P P+ Y   P A+  + +    S P+N  + S   APG ++  SQ S V
Sbjct: 29  PSPNYYY-PPVAQGHYPVNNMWSLPSNVRVISSHGAPGHQTSASQPSTV 76


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 632 SNAPCARNAWKIRISCS-APANRTISSVSPAPGTRSRDSQGSEVYCP--SGEKCPLANST 462
           +N P    A  +  + S AP +  +S++SP P     +  GS    P    EK P+ + T
Sbjct: 717 TNVPIVPEAVHLSTAFSTAPVSTIVSNISPLPTVAPPNVSGSPSETPISKPEKVPVVSQT 776


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 621 LCQERLEDTHFVQCPSQPHH 562
           LC E+L D H V C S   H
Sbjct: 314 LCVEKLTDLHLVICGSSARH 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,207
Number of Sequences: 5004
Number of extensions: 62424
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)