Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP02_T7_H12
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 33 0.27
02_05_0341 - 28115835-28116404 33 0.35
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 31 1.1
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 31 1.4
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 30 2.5
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 25 3.0
12_02_0905 - 24188563-24189189,24189648-24190577 29 3.3
12_02_0909 - 24217980-24218597,24219182-24219640 29 4.4
03_02_0915 + 12360079-12360095,12360225-12361353 29 4.4
08_01_0506 - 4400776-4400937,4401164-4401253,4401334-4401546,440... 28 7.6
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 28 7.6
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 28 7.6
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 28 7.6
01_07_0343 - 42866940-42867656 28 7.6
01_06_0643 + 30818002-30818679 28 7.6
01_06_0176 - 27233553-27234588,27235629-27235768 28 7.6
01_04_0063 - 15574855-15575143,15575398-15575602,15575746-155759... 28 7.6
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 93 NVNFIRNITGASSDARRAQESPNEVHDAFRRSSGSEIES 209
N+++IR+++GA D +++ PNEV + SS E+ S
Sbjct: 360 NISYIRSVSGAVVDLEESRDYPNEVLVMIKGSSSQEVLS 398
>02_05_0341 - 28115835-28116404
Length = 189
Score = 32.7 bits (71), Expect = 0.35
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -1
Query: 630 KCTLCQERLEDTHFVQCPSQPHHKFCFPCSRDSIKRQ---PGIRGVLSQRREMPPGELDG 460
+C +C ED V+ Q H+F C ++ P R VL EMPPGE G
Sbjct: 99 ECAICLVEFEDGQAVRVLPQCDHRFHAACIDTWLRAHSSCPSCRRVLVAA-EMPPGERCG 157
Query: 459 PVGIHAG 439
G +G
Sbjct: 158 RCGARSG 164
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 630 KCTLCQERLEDTHFVQCPSQPHHKFCFPCS 541
KCT C + + + P+HK CF CS
Sbjct: 9 KCTACDKTVHFIDLLTADGVPYHKTCFKCS 38
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 630 KCTLCQERLEDTHFVQCPSQPHHKFCFPCS 541
KC CQ+ + + + +HK CF CS
Sbjct: 104 KCAACQKTVYPLEKLTLEGESYHKSCFKCS 133
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 93 NVNFIRNITGASSDARRAQESPNEVHD--AFRRSSGSEIESIVRFVERTDIVTVDYLQCY 266
N++F +I D +A E P+ +H+ A R+S V E +V+Y C
Sbjct: 557 NLSFDLDIDVNKFDTYKA-EGPSALHNPSASMRASSVIAMDTVHSAEENSTESVEYHPCD 615
Query: 267 IQDVRRCSAAEPPGGL 314
+ DV + S+A GG+
Sbjct: 616 VDDVHKPSSAVRSGGM 631
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 630 KCTLCQERLEDTHFVQCPSQPHHKFCFPCS 541
KC C + + + S P+HK CF CS
Sbjct: 9 KCNACDKTVHFIDLLTADSIPYHKSCFRCS 38
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 25.4 bits (53), Expect(2) = 3.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 656 PHPHPHRYSNAPCAR 612
PHPHPH + + P R
Sbjct: 490 PHPHPHPHPHPPQGR 504
Score = 22.6 bits (46), Expect(2) = 3.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 677 PVKAPKCPHPHPH 639
P + PHPHPH
Sbjct: 485 PTTSHPHPHPHPH 497
>12_02_0905 - 24188563-24189189,24189648-24190577
Length = 518
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 168 HDAFRRSSGSEIESIV---RFVERTDIVTVDYLQCYIQDVRRCSAAEP 302
H + + +EI++ V R VE D+ + Y+QC I++ R A P
Sbjct: 334 HPETMKKARAEIDANVGTARLVEEADMANLPYIQCVIKETLRLRTAGP 381
>12_02_0909 - 24217980-24218597,24219182-24219640
Length = 358
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 183 RSSGSEIESIV---RFVERTDIVTVDYLQCYIQDVRRCSAAEPPGGLVPRLSSRE 338
R + EI S+V R ++ D+ + YL+C I + R P LVP +SR+
Sbjct: 182 RKATDEINSVVGMSRLLQEPDLANLPYLRCIITETLRLYPLAP--HLVPHEASRD 234
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2
Query: 575 ANRTISSVSPAPGT-RSRDSQGSEVYCPSGEKCPLANSTVPWAFMQGEIATIMGDELKPK 399
A T ++ S + GT ++R S GS P+ + P A+ + ATI L P+
Sbjct: 236 ATTTGAAASASSGTDKTRSSAGSNAPQPAAPQSPAASQASRSNVSSKKSATISSGVLGPR 295
Query: 398 KERE 387
K RE
Sbjct: 296 KARE 299
>08_01_0506 - 4400776-4400937,4401164-4401253,4401334-4401546,
4401725-4401817,4402357-4402551,4402643-4402735,
4403554-4403649,4404186-4404633,4405078-4405745,
4406822-4406884,4408650-4408847,4409265-4409982,
4410447-4410580
Length = 1056
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 125 RSRNVPNEVHVGFGSFSIRHRSGAPAPLTGGIIDL 21
RSR PN H G G S R+ AP+ G D+
Sbjct: 945 RSRQFPNMTHAGPGQKSHVERAAINAPVQGSAADV 979
>06_01_0039 -
386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 465 DGPVGIHAG*NCYDNGRRTETEEGTRDLERHLVRPTVSVV 346
D P G G + + G T T G + ++ LV PT S +
Sbjct: 120 DDPFGEFMGDDAFFGGNNTHTMTGDQPIQASLVPPTTSTI 159
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/38 (31%), Positives = 14/38 (36%)
Frame = -1
Query: 630 KCTLCQERLEDTHFVQCPSQPHHKFCFPCSRDSIKRQP 517
KC C + V Q +HK CF CS P
Sbjct: 107 KCATCSKTAYPLEKVTVEGQAYHKSCFKCSHGGCAISP 144
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 630 KCTLCQERLEDTHFVQCPSQPHHKFCFPCS 541
KC CQ+ + + + +HK CF CS
Sbjct: 105 KCAACQKTVYPLEKLTLEGESYHKSCFKCS 134
>01_07_0343 - 42866940-42867656
Length = 238
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 674 VKAPKCPHPHPHRYSNAPCA 615
V +P PHPH H Y+NA A
Sbjct: 205 VPSPYHPHPHHHSYNNAAYA 224
>01_06_0643 + 30818002-30818679
Length = 225
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = -2
Query: 671 KAPKCPHPHPHRYSNAPCARNAWKIRISCSAPANRTISSVSPAPGTRSRDSQGSEVYCPS 492
K +CP H +++ P A R P++ T + P P R + CP
Sbjct: 51 KVRRCPRSRAHEWTSCPYAHPGEAARRR--DPSHVTYTG-EPCPDFRV----AARAACPR 103
Query: 491 GEKCPLANST 462
G CP A+ T
Sbjct: 104 GSGCPFAHGT 113
>01_06_0176 - 27233553-27234588,27235629-27235768
Length = 391
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 144 AQESPNEVHDAFRRSSGSEIESIVRFVERTDIVTVDYLQCYIQDVRRCSAAEPPGG 311
+ S ++ DA E +++ R++ I T DY+ CY D +A GG
Sbjct: 254 SSSSSSQAADAGGGGESEEAKAMCRWLPHLYINTNDYICCYYNDAAAGTATVAAGG 309
>01_04_0063 -
15574855-15575143,15575398-15575602,15575746-15575947,
15576038-15576613,15576623-15576786,15576826-15576928,
15577259-15577847,15578056-15578372
Length = 814
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = -2
Query: 677 PVKAPKCPHPHPHRYSNAPCARNAWKIRISCSAPANRTISSVSPAPGTRSRDS 519
P+ A K P + S+AP + WK + AP+ + G S +S
Sbjct: 605 PIPAKKLEQPAQKKPSSAPKPKKVWKEKPKTPAPSPPKMGGTKSEGGNSSNES 657
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,600,848
Number of Sequences: 37544
Number of extensions: 516973
Number of successful extensions: 2067
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2065
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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