Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_H01
         (756 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC146824-1|AAI46825.1|  788|Homo sapiens Unknown (protein for IM...    33   1.5  
AB209119-1|BAD92356.1| 1780|Homo sapiens eukaryotic translation ...    32   2.6  
AC005175-4|AAC24305.1|  813|Homo sapiens R31449_3 protein.             31   4.5  
X85237-1|CAA59494.1|  793|Homo sapiens human splicing factor pro...    31   5.9  
CR456575-1|CAG30461.1|  793|Homo sapiens SF3A1 protein.                31   5.9  
BC007684-1|AAH07684.1|  793|Homo sapiens splicing factor 3a, sub...    31   5.9  
BC001976-1|AAH01976.1|  793|Homo sapiens splicing factor 3a, sub...    31   5.9  
AC004997-4|AAC23435.1|  793|Homo sapiens spliceosome associated ...    31   5.9  

>BC146824-1|AAI46825.1|  788|Homo sapiens Unknown (protein for
           IMAGE:8860452) protein.
          Length = 788

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 724 RQAAGNGKANGNQTGPGSGRSACACAGIRNTAPGDGV--G*ACTTSGEGA 581
           R  +G G  +G+  GP SG  A   A     APG G   G AC+ +   +
Sbjct: 259 RSCSGPGSGSGSGPGPSSGPGAAPAADKEREAPGGGAASGGACSAASSAS 308


>AB209119-1|BAD92356.1| 1780|Homo sapiens eukaryotic translation
           initiation factor 4 gamma, 3 variant protein.
          Length = 1780

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = -3

Query: 736 PPYXRQAAGNGKANGNQTGPGSGRSACACAGIRNTAPGDGVG*ACTTSGEGATQP 572
           PP     A  G A    TGPG+G +A A A +    P      A   +   A  P
Sbjct: 29  PPAHEDIAVKGTATAAGTGPGTGAAAAAAAAVPPPHPAAAAAAAAAAAAAAAAVP 83


>AC005175-4|AAC24305.1|  813|Homo sapiens R31449_3 protein.
          Length = 813

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 630 PPGMELDRPVPPVVKAPRSPMIPPSAPRSLGSAS 529
           PPG     P  PV  +PR P  PP  P S G++S
Sbjct: 752 PPGPPEGHPTSPVT-SPRPPTAPPRHPASSGNSS 784


>X85237-1|CAA59494.1|  793|Homo sapiens human splicing factor
           protein.
          Length = 793

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -1

Query: 630 PPGMELDRPVPPVVKAPRSPMI--PPSAP 550
           PPG  +  P+PP++ APR  ++  PPSAP
Sbjct: 609 PPGSVI-APMPPIIHAPRINVVPMPPSAP 636


>CR456575-1|CAG30461.1|  793|Homo sapiens SF3A1 protein.
          Length = 793

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -1

Query: 630 PPGMELDRPVPPVVKAPRSPMI--PPSAP 550
           PPG  +  P+PP++ APR  ++  PPSAP
Sbjct: 609 PPGSVI-APMPPIIHAPRINVVPMPPSAP 636


>BC007684-1|AAH07684.1|  793|Homo sapiens splicing factor 3a,
           subunit 1, 120kDa protein.
          Length = 793

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -1

Query: 630 PPGMELDRPVPPVVKAPRSPMI--PPSAP 550
           PPG  +  P+PP++ APR  ++  PPSAP
Sbjct: 609 PPGSVI-APMPPIIHAPRINVVPMPPSAP 636


>BC001976-1|AAH01976.1|  793|Homo sapiens splicing factor 3a,
           subunit 1, 120kDa protein.
          Length = 793

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -1

Query: 630 PPGMELDRPVPPVVKAPRSPMI--PPSAP 550
           PPG  +  P+PP++ APR  ++  PPSAP
Sbjct: 609 PPGSVI-APMPPIIHAPRINVVPMPPSAP 636


>AC004997-4|AAC23435.1|  793|Homo sapiens spliceosome associated
           protein 114 (SF3a) protein.
          Length = 793

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -1

Query: 630 PPGMELDRPVPPVVKAPRSPMI--PPSAP 550
           PPG  +  P+PP++ APR  ++  PPSAP
Sbjct: 609 PPGSVI-APMPPIIHAPRINVVPMPPSAP 636


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,830,786
Number of Sequences: 237096
Number of extensions: 2045417
Number of successful extensions: 8602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8541
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)